Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
PTPN9P43378 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PTPN9P43378 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PTPN9P43378 SHMT1P1-201ENST00000419974 1312 ntBASIC14.97□□□□□ -0.01
PTPN9P43378 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
PTPN9P43378 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.97□□□□□ -0.01
PTPN9P43378 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
PTPN9P43378 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.97□□□□□ -0.01
PTPN9P43378 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.97□□□□□ -0.01
PTPN9P43378 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC14.97□□□□□ -0.01
PTPN9P43378 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.97□□□□□ -0.01
PTPN9P43378 AC006033.1-201ENST00000440505 426 ntBASIC14.97□□□□□ -0.01
PTPN9P43378 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.97□□□□□ -0.01
PTPN9P43378 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC14.97□□□□□ -0.01
PTPN9P43378 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC14.97□□□□□ -0.01
PTPN9P43378 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 AL022328.3-201ENST00000607943 679 ntBASIC14.97□□□□□ -0.01
PTPN9P43378 AC067750.1-201ENST00000608826 6545 ntBASIC14.97□□□□□ -0.01
PTPN9P43378 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.97□□□□□ -0.01
PTPN9P43378 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
PTPN9P43378 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
PTPN9P43378 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
PTPN9P43378 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
PTPN9P43378 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.97□□□□□ -0.01
PTPN9P43378 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.97□□□□□ -0.01
PTPN9P43378 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN9P43378 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC14.97□□□□□ -0.01
PTPN9P43378 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.96□□□□□ -0.01
PTPN9P43378 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC14.96□□□□□ -0.01
PTPN9P43378 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN9P43378 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN9P43378 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
PTPN9P43378 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN9P43378 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.96□□□□□ -0.01
PTPN9P43378 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.96□□□□□ -0.01
PTPN9P43378 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN9P43378 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN9P43378 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PTPN9P43378 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC14.96□□□□□ -0.01
PTPN9P43378 RN7SL219P-201ENST00000582872 296 ntBASIC14.96□□□□□ -0.01
PTPN9P43378 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN9P43378 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN9P43378 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC14.96□□□□□ -0.01
PTPN9P43378 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC14.96□□□□□ -0.01
PTPN9P43378 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC14.96□□□□□ -0.01
PTPN9P43378 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
PTPN9P43378 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PTPN9P43378 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN9P43378 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PTPN9P43378 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.02
PTPN9P43378 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.02
PTPN9P43378 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PTPN9P43378 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.96□□□□□ -0.02
PTPN9P43378 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms