Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC099548.2-209ENST00000480264 625 ntBASIC13.69□□□□□ -0.22
SOX3P41225 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.69□□□□□ -0.22
SOX3P41225 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.69□□□□□ -0.22
SOX3P41225 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.69□□□□□ -0.22
SOX3P41225 EMC4-209ENST00000559421 497 ntTSL 2 BASIC13.69□□□□□ -0.22
SOX3P41225 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.69□□□□□ -0.22
SOX3P41225 AL022328.3-201ENST00000607943 679 ntBASIC13.69□□□□□ -0.22
SOX3P41225 AL008638.5-201ENST00000623814 1298 ntBASIC13.69□□□□□ -0.22
SOX3P41225 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.69□□□□□ -0.22
SOX3P41225 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
SOX3P41225 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.69□□□□□ -0.22
SOX3P41225 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
SOX3P41225 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC13.69□□□□□ -0.22
SOX3P41225 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 AC005562.1-201ENST00000583030 3219 ntBASIC13.69□□□□□ -0.22
SOX3P41225 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.69□□□□□ -0.22
SOX3P41225 MAPT-IT1-201ENST00000624111 3016 ntBASIC13.69□□□□□ -0.22
SOX3P41225 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.68□□□□□ -0.22
SOX3P41225 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SOX3P41225 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
SOX3P41225 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
SOX3P41225 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.68□□□□□ -0.22
SOX3P41225 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.68□□□□□ -0.22
SOX3P41225 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
SOX3P41225 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13.68□□□□□ -0.22
SOX3P41225 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SOX3P41225 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.68□□□□□ -0.22
SOX3P41225 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC13.68□□□□□ -0.22
SOX3P41225 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SOX3P41225 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 AL354877.1-201ENST00000424412 413 ntBASIC13.68□□□□□ -0.22
SOX3P41225 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.68□□□□□ -0.22
SOX3P41225 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 AC006033.1-201ENST00000440505 426 ntBASIC13.68□□□□□ -0.22
SOX3P41225 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.68□□□□□ -0.22
SOX3P41225 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.68□□□□□ -0.22
SOX3P41225 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC13.68□□□□□ -0.22
SOX3P41225 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.68□□□□□ -0.22
SOX3P41225 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC13.68□□□□□ -0.22
SOX3P41225 AC005730.2-201ENST00000564549 1184 ntBASIC13.68□□□□□ -0.22
SOX3P41225 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.68□□□□□ -0.22
SOX3P41225 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.68□□□□□ -0.22
SOX3P41225 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
SOX3P41225 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
SOX3P41225 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
SOX3P41225 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SOX3P41225 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.68□□□□□ -0.22
SOX3P41225 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
SOX3P41225 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC13.68□□□□□ -0.22
SOX3P41225 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX3P41225 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.67□□□□□ -0.22
SOX3P41225 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SOX3P41225 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 SHC1P1-201ENST00000425230 1745 ntBASIC13.67□□□□□ -0.22
SOX3P41225 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC13.67□□□□□ -0.22
SOX3P41225 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
SOX3P41225 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.67□□□□□ -0.22
SOX3P41225 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 PPT1-213ENST00000641319 2388 ntBASIC13.67□□□□□ -0.22
SOX3P41225 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.67□□□□□ -0.22
SOX3P41225 TCAF1P1-201ENST00000414990 2232 ntBASIC13.67□□□□□ -0.22
SOX3P41225 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms