Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 AC110792.4-201ENST00000609843 298 ntBASIC14.75□□□□□ -0.05
COL9A1P20849 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC14.75□□□□□ -0.05
COL9A1P20849 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.75□□□□□ -0.05
COL9A1P20849 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.75□□□□□ -0.05
COL9A1P20849 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 AC091951.1-201ENST00000512854 2465 ntBASIC14.75□□□□□ -0.05
COL9A1P20849 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 AC132872.4-202ENST00000622924 2756 ntBASIC14.75□□□□□ -0.05
COL9A1P20849 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC14.75□□□□□ -0.05
COL9A1P20849 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC14.75□□□□□ -0.05
COL9A1P20849 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
COL9A1P20849 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
COL9A1P20849 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 AC022532.1-201ENST00000624563 1728 ntBASIC14.75□□□□□ -0.05
COL9A1P20849 ABI1-206ENST00000376140 1446 ntTSL 5 BASIC14.75□□□□□ -0.05
COL9A1P20849 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.74□□□□□ -0.05
COL9A1P20849 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.74□□□□□ -0.05
COL9A1P20849 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
COL9A1P20849 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
COL9A1P20849 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
COL9A1P20849 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
COL9A1P20849 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
COL9A1P20849 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 APOO-201ENST00000379226 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 AP000354.1-201ENST00000396982 456 ntBASIC14.74□□□□□ -0.05
COL9A1P20849 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC14.74□□□□□ -0.05
COL9A1P20849 OR2R1P-201ENST00000441404 914 ntBASIC14.74□□□□□ -0.05
COL9A1P20849 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC14.74□□□□□ -0.05
COL9A1P20849 AC069421.1-201ENST00000447462 323 ntBASIC14.74□□□□□ -0.05
COL9A1P20849 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
COL9A1P20849 AC005042.2-201ENST00000449526 510 ntTSL 4 BASIC14.74□□□□□ -0.05
COL9A1P20849 MTND2P39-201ENST00000457230 764 ntBASIC14.74□□□□□ -0.05
COL9A1P20849 RN7SL838P-201ENST00000481676 295 ntBASIC14.74□□□□□ -0.05
COL9A1P20849 FAM86JP-202ENST00000484500 988 ntBASIC14.74□□□□□ -0.05
COL9A1P20849 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC14.74□□□□□ -0.05
COL9A1P20849 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC14.74□□□□□ -0.05
COL9A1P20849 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC14.74□□□□□ -0.05
COL9A1P20849 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC14.74□□□□□ -0.05
COL9A1P20849 DLK1-205ENST00000556051 469 ntTSL 2 BASIC14.74□□□□□ -0.05
COL9A1P20849 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC14.74□□□□□ -0.05
COL9A1P20849 AP001462.1-201ENST00000594089 452 ntBASIC14.74□□□□□ -0.05
COL9A1P20849 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC14.74□□□□□ -0.05
COL9A1P20849 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
COL9A1P20849 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 MTA3-204ENST00000406911 2041 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
COL9A1P20849 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
COL9A1P20849 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
COL9A1P20849 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL9A1P20849 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 AC092135.3-201ENST00000624151 1846 ntBASIC14.73□□□□□ -0.05
COL9A1P20849 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.73□□□□□ -0.05
COL9A1P20849 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
COL9A1P20849 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.73□□□□□ -0.05
COL9A1P20849 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
COL9A1P20849 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.73□□□□□ -0.05
COL9A1P20849 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 GEMIN8P4-201ENST00000380526 729 ntBASIC14.73□□□□□ -0.05
COL9A1P20849 MIR193A-201ENST00000384882 88 ntBASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms