Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
VPS29Q9UBQ0 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AC131212.3-201ENST00000624087 4219 ntBASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AC023794.5-201ENST00000564380 2157 ntBASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AL035633.1-201ENST00000406139 838 ntBASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AL157407.1-201ENST00000435784 904 ntBASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AC234783.1-201ENST00000441761 496 ntBASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 CTBP2P5-201ENST00000454986 1264 ntBASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AC100850.1-201ENST00000506768 649 ntBASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AC012645.4-201ENST00000610691 1061 ntBASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 MIR6720-201ENST00000611664 98 ntBASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AL162274.1-201ENST00000617191 1098 ntBASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AC111170.3-201ENST00000624282 2464 ntBASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS29Q9UBQ0 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 AL645933.1-201ENST00000440087 609 ntBASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 KRT17P8-201ENST00000540749 863 ntBASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 REXO1L6P-201ENST00000603433 1515 ntBASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
VPS29Q9UBQ0 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms