Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 AC006987.1-201ENST00000413610 527 ntBASIC13.85□□□□□ -0.19
VPS13AQ96RL7 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 FAM69A-204ENST00000615519 865 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 RN7SL69P-201ENST00000468423 272 ntBASIC13.84□□□□□ -0.19
VPS13AQ96RL7 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 AL359219.1-201ENST00000556311 934 ntBASIC13.84□□□□□ -0.19
VPS13AQ96RL7 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 CEBPZOS-203ENST00000397226 1499 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 FAM86FP-201ENST00000338711 969 ntBASIC13.84□□□□□ -0.19
VPS13AQ96RL7 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 RN7SKP212-201ENST00000410851 328 ntBASIC13.84□□□□□ -0.19
VPS13AQ96RL7 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 PHBP10-201ENST00000416467 784 ntBASIC13.84□□□□□ -0.19
VPS13AQ96RL7 YY1P2-201ENST00000438766 948 ntBASIC13.84□□□□□ -0.19
VPS13AQ96RL7 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 AC007686.3-201ENST00000619017 3487 ntBASIC13.84□□□□□ -0.19
VPS13AQ96RL7 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 CYP2T1P-202ENST00000641596 2535 ntBASIC13.84□□□□□ -0.19
VPS13AQ96RL7 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13AQ96RL7 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
VPS13AQ96RL7 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.19
VPS13AQ96RL7 AC004910.1-201ENST00000433493 787 ntBASIC13.83□□□□□ -0.19
VPS13AQ96RL7 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.19
VPS13AQ96RL7 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC13.83□□□□□ -0.19
VPS13AQ96RL7 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC13.83□□□□□ -0.19
VPS13AQ96RL7 AC048382.6-201ENST00000621980 1223 ntBASIC13.83□□□□□ -0.19
VPS13AQ96RL7 AC021072.1-201ENST00000635789 835 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
VPS13AQ96RL7 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
VPS13AQ96RL7 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
VPS13AQ96RL7 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
VPS13AQ96RL7 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.83□□□□□ -0.19
VPS13AQ96RL7 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 AL031590.1-202ENST00000641466 1737 ntBASIC13.83□□□□□ -0.2
VPS13AQ96RL7 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 AL591499.1-201ENST00000307155 1153 ntBASIC13.83□□□□□ -0.2
VPS13AQ96RL7 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 AL133351.2-201ENST00000437718 484 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 SRPK2P-201ENST00000523408 1100 ntBASIC13.83□□□□□ -0.2
VPS13AQ96RL7 PPY-202ENST00000587006 431 ntTSL 3 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 AC134878.2-201ENST00000620700 1265 ntBASIC13.83□□□□□ -0.2
VPS13AQ96RL7 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms