Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 MARCH5-201ENST00000358935 3926 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 RCC2P8-201ENST00000502779 1035 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SYT17-208ENST00000568433 812 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC009955.4-201ENST00000597192 544 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SMIM5-202ENST00000537494 4344 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AP000845.1-201ENST00000581677 2131 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC022616.1-201ENST00000518688 554 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 LY6E-208ENST00000520531 490 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC242376.1-201ENST00000559033 726 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 REXO1L4P-201ENST00000605109 1937 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC010141.1-201ENST00000411585 623 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC104784.1-201ENST00000473096 294 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 NKG7-204ENST00000595217 816 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AL805961.1-203ENST00000641078 1258 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC068587.8-201ENST00000641239 219 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SNX22-201ENST00000325881 3614 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 PDXDC2P-NPIPB14P-205ENST00000531894 4184 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ACIN1-213ENST00000555053 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 MKL1-210ENST00000614754 3917 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SMOC1-202ENST00000381280 3666 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 CCDC69-201ENST00000355417 3451 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 SEPT9-203ENST00000427177 3821 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 MTHFR-217ENST00000641820 1569 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AC138649.2-201ENST00000615886 705 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AL161773.1-201ENST00000624845 863 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SYNE1Q8NF91 AL360270.3-201ENST00000609118 1348 ntBASIC4.53□□□□□ -1.68
SYNE1Q8NF91 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.69
SYNE1Q8NF91 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.69
SYNE1Q8NF91 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms