Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 CROT-203ENST00000419147 2959 ntTSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 AC215219.1-201ENST00000400706 1817 ntBASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 AL645937.2-201ENST00000396808 931 ntBASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 HLA-K-203ENST00000430151 1046 ntBASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 GIMAP3P-201ENST00000495150 836 ntBASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 ETFRF1-205ENST00000555711 783 ntTSL 3 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 AC079414.2-201ENST00000567157 1104 ntBASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 AC133539.2-201ENST00000604757 467 ntBASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 LINC00226-202ENST00000618204 1052 ntTSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
DEPDC4Q8N2C3 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 OR8S1-201ENST00000310194 1080 ntBASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms