Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 MIR4522-201ENST00000584932 87 ntBASIC13.97□□□□□ -0.17
COL28A1Q2UY09 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 AL358472.3-201ENST00000608147 415 ntBASIC13.97□□□□□ -0.17
COL28A1Q2UY09 AC005618.3-201ENST00000624928 458 ntBASIC13.97□□□□□ -0.17
COL28A1Q2UY09 AC005912.2-201ENST00000619492 2400 ntBASIC13.97□□□□□ -0.17
COL28A1Q2UY09 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 KRT8P21-201ENST00000430398 1491 ntBASIC13.97□□□□□ -0.17
COL28A1Q2UY09 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 AL390755.1-201ENST00000623716 2027 ntBASIC13.97□□□□□ -0.17
COL28A1Q2UY09 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL28A1Q2UY09 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 CLUHP2-201ENST00000426660 1303 ntBASIC13.96□□□□□ -0.17
COL28A1Q2UY09 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 AC079781.5-202ENST00000641784 3743 ntBASIC13.96□□□□□ -0.17
COL28A1Q2UY09 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 AGAP7P-201ENST00000582299 2062 ntBASIC13.96□□□□□ -0.17
COL28A1Q2UY09 AGAP14-201ENST00000624701 2060 ntBASIC13.96□□□□□ -0.17
COL28A1Q2UY09 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 AL645937.2-201ENST00000396808 931 ntBASIC13.96□□□□□ -0.17
COL28A1Q2UY09 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 HIST2H2BA-201ENST00000412169 381 ntBASIC13.96□□□□□ -0.17
COL28A1Q2UY09 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 AC022616.1-201ENST00000518688 554 ntBASIC13.96□□□□□ -0.17
COL28A1Q2UY09 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 TMCO5B-205ENST00000530020 894 ntBASIC13.96□□□□□ -0.17
COL28A1Q2UY09 POLD4-208ENST00000532830 904 ntTSL 3 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 NUDT4P2-201ENST00000578341 546 ntBASIC13.96□□□□□ -0.17
COL28A1Q2UY09 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 MIR3180-2-201ENST00000581748 88 ntBASIC13.96□□□□□ -0.17
COL28A1Q2UY09 MIR6769A-201ENST00000617340 73 ntBASIC13.96□□□□□ -0.17
COL28A1Q2UY09 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.96□□□□□ -0.17
COL28A1Q2UY09 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL28A1Q2UY09 E2F3P2-201ENST00000447755 1422 ntBASIC13.96□□□□□ -0.18
COL28A1Q2UY09 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.18
COL28A1Q2UY09 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL28A1Q2UY09 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL28A1Q2UY09 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.96□□□□□ -0.18
COL28A1Q2UY09 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.96□□□□□ -0.18
COL28A1Q2UY09 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
COL28A1Q2UY09 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL28A1Q2UY09 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms