Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.36■□□□□ 0.05
LIG3P49916 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIG3P49916 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
LIG3P49916 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LIG3P49916 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.35■□□□□ 0.05
LIG3P49916 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC15.35■□□□□ 0.05
LIG3P49916 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
LIG3P49916 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.35■□□□□ 0.05
LIG3P49916 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC15.35■□□□□ 0.05
LIG3P49916 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC15.35■□□□□ 0.05
LIG3P49916 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC15.35■□□□□ 0.05
LIG3P49916 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.35■□□□□ 0.05
LIG3P49916 MIR658-201ENST00000385210 100 ntBASIC15.35■□□□□ 0.05
LIG3P49916 AC092933.1-201ENST00000393644 945 ntBASIC15.35■□□□□ 0.05
LIG3P49916 BOLA2P3-201ENST00000404566 256 ntBASIC15.35■□□□□ 0.05
LIG3P49916 MIR1909-201ENST00000411312 80 ntBASIC15.35■□□□□ 0.05
LIG3P49916 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
LIG3P49916 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.35■□□□□ 0.05
LIG3P49916 AC022210.1-201ENST00000449856 793 ntBASIC15.35■□□□□ 0.05
LIG3P49916 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
LIG3P49916 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.35■□□□□ 0.05
LIG3P49916 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.35■□□□□ 0.05
LIG3P49916 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.35■□□□□ 0.05
LIG3P49916 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.35■□□□□ 0.05
LIG3P49916 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.35■□□□□ 0.05
LIG3P49916 MIR6805-201ENST00000615055 62 ntBASIC15.35■□□□□ 0.05
LIG3P49916 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.35■□□□□ 0.05
LIG3P49916 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
LIG3P49916 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 AC073548.1-201ENST00000624088 1882 ntBASIC15.35■□□□□ 0.05
LIG3P49916 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 OS9-218ENST00000551035 2246 ntTSL 2 BASIC15.35■□□□□ 0.05
LIG3P49916 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIG3P49916 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
LIG3P49916 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC15.34■□□□□ 0.05
LIG3P49916 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC15.34■□□□□ 0.05
LIG3P49916 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC15.34■□□□□ 0.05
LIG3P49916 FAM90A12P-201ENST00000519497 2375 ntBASIC15.34■□□□□ 0.05
LIG3P49916 FAM90A24P-201ENST00000520792 2369 ntBASIC15.34■□□□□ 0.05
LIG3P49916 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC15.34■□□□□ 0.05
LIG3P49916 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
LIG3P49916 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
LIG3P49916 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC15.34■□□□□ 0.05
LIG3P49916 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 RNU1-114P-201ENST00000365297 166 ntBASIC15.34■□□□□ 0.05
LIG3P49916 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.34■□□□□ 0.05
LIG3P49916 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 NUS1P3-201ENST00000423502 862 ntBASIC15.34■□□□□ 0.05
LIG3P49916 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.34■□□□□ 0.05
LIG3P49916 AC114812.1-204ENST00000449669 728 ntBASIC15.34■□□□□ 0.05
LIG3P49916 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.34■□□□□ 0.05
LIG3P49916 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.34■□□□□ 0.05
LIG3P49916 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.34■□□□□ 0.05
LIG3P49916 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.34■□□□□ 0.05
LIG3P49916 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.34■□□□□ 0.05
LIG3P49916 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 SNX29P1-201ENST00000548357 1007 ntBASIC15.34■□□□□ 0.05
LIG3P49916 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.34■□□□□ 0.05
LIG3P49916 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.34■□□□□ 0.05
LIG3P49916 SAMD11P1-201ENST00000571429 661 ntBASIC15.34■□□□□ 0.05
LIG3P49916 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms