Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PTPN9P43378 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC14.99□□□□□ -0.01
PTPN9P43378 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC14.99□□□□□ -0.01
PTPN9P43378 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PTPN9P43378 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.99□□□□□ -0.01
PTPN9P43378 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
PTPN9P43378 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC14.99□□□□□ -0.01
PTPN9P43378 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PTPN9P43378 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.99□□□□□ -0.01
PTPN9P43378 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC14.99□□□□□ -0.01
PTPN9P43378 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.99□□□□□ -0.01
PTPN9P43378 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC14.99□□□□□ -0.01
PTPN9P43378 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC14.99□□□□□ -0.01
PTPN9P43378 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 AC044849.1-201ENST00000519737 1188 ntBASIC14.99□□□□□ -0.01
PTPN9P43378 CCNC-217ENST00000523985 958 ntTSL 2 BASIC14.99□□□□□ -0.01
PTPN9P43378 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.99□□□□□ -0.01
PTPN9P43378 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC14.99□□□□□ -0.01
PTPN9P43378 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.99□□□□□ -0.01
PTPN9P43378 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC14.99□□□□□ -0.01
PTPN9P43378 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.99□□□□□ -0.01
PTPN9P43378 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PTPN9P43378 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 RAN-210ENST00000541630 1475 ntTSL 2 BASIC14.99□□□□□ -0.01
PTPN9P43378 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.99□□□□□ -0.01
PTPN9P43378 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.99□□□□□ -0.01
PTPN9P43378 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN9P43378 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.99□□□□□ -0.01
PTPN9P43378 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.98□□□□□ -0.01
PTPN9P43378 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
PTPN9P43378 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.98□□□□□ -0.01
PTPN9P43378 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
PTPN9P43378 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PTPN9P43378 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
PTPN9P43378 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 AC103592.1-201ENST00000394513 664 ntBASIC14.98□□□□□ -0.01
PTPN9P43378 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.98□□□□□ -0.01
PTPN9P43378 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.98□□□□□ -0.01
PTPN9P43378 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC14.98□□□□□ -0.01
PTPN9P43378 NKAIN1P1-201ENST00000435754 582 ntBASIC14.98□□□□□ -0.01
PTPN9P43378 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC14.98□□□□□ -0.01
PTPN9P43378 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC14.98□□□□□ -0.01
PTPN9P43378 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC14.98□□□□□ -0.01
PTPN9P43378 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC14.98□□□□□ -0.01
PTPN9P43378 AL118558.3-201ENST00000607414 1079 ntBASIC14.98□□□□□ -0.01
PTPN9P43378 AL157813.1-201ENST00000612996 587 ntBASIC14.98□□□□□ -0.01
PTPN9P43378 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
PTPN9P43378 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.98□□□□□ -0.01
PTPN9P43378 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.98□□□□□ -0.01
PTPN9P43378 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN9P43378 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms