Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.8■□□□□ 0.28
ERCC3P19447 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC16.8■□□□□ 0.28
ERCC3P19447 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.8■□□□□ 0.28
ERCC3P19447 MIR3188-201ENST00000583494 85 ntBASIC16.8■□□□□ 0.28
ERCC3P19447 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
ERCC3P19447 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 MIR6842-201ENST00000612539 65 ntBASIC16.8■□□□□ 0.28
ERCC3P19447 AC242376.2-201ENST00000619355 883 ntBASIC16.8■□□□□ 0.28
ERCC3P19447 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC16.8■□□□□ 0.28
ERCC3P19447 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC16.8■□□□□ 0.28
ERCC3P19447 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.8■□□□□ 0.28
ERCC3P19447 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC16.8■□□□□ 0.28
ERCC3P19447 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC16.8■□□□□ 0.28
ERCC3P19447 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
ERCC3P19447 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
ERCC3P19447 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
ERCC3P19447 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.8■□□□□ 0.28
ERCC3P19447 LINC01101-201ENST00000622953 1884 ntBASIC16.8■□□□□ 0.28
ERCC3P19447 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16.8■□□□□ 0.28
ERCC3P19447 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
ERCC3P19447 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
ERCC3P19447 MRPL37P1-201ENST00000592451 1337 ntBASIC16.79■□□□□ 0.28
ERCC3P19447 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC16.79■□□□□ 0.28
ERCC3P19447 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 MBP-201ENST00000354542 575 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC3P19447 RPS9P1-201ENST00000419943 583 ntBASIC16.79■□□□□ 0.28
ERCC3P19447 AL592076.1-201ENST00000424448 303 ntBASIC16.79■□□□□ 0.28
ERCC3P19447 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC16.79■□□□□ 0.28
ERCC3P19447 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC16.79■□□□□ 0.28
ERCC3P19447 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC16.79■□□□□ 0.28
ERCC3P19447 CFL1-206ENST00000527344 962 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC3P19447 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC3P19447 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC3P19447 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC16.79■□□□□ 0.28
ERCC3P19447 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC16.79■□□□□ 0.28
ERCC3P19447 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC3P19447 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
ERCC3P19447 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 AC097359.2-201ENST00000604992 2389 ntBASIC16.79■□□□□ 0.28
ERCC3P19447 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
ERCC3P19447 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
ERCC3P19447 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.79■□□□□ 0.28
ERCC3P19447 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
ERCC3P19447 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ERCC3P19447 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.78■□□□□ 0.28
ERCC3P19447 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ERCC3P19447 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ERCC3P19447 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ERCC3P19447 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.78■□□□□ 0.28
ERCC3P19447 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.78■□□□□ 0.28
ERCC3P19447 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC16.78■□□□□ 0.28
ERCC3P19447 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC16.78■□□□□ 0.28
ERCC3P19447 TSPY25P-201ENST00000429463 745 ntBASIC16.78■□□□□ 0.28
ERCC3P19447 RN7SL8P-201ENST00000461771 266 ntBASIC16.78■□□□□ 0.28
ERCC3P19447 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.78■□□□□ 0.28
ERCC3P19447 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC16.78■□□□□ 0.28
ERCC3P19447 AC135983.4-201ENST00000564116 1262 ntBASIC16.78■□□□□ 0.28
ERCC3P19447 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC16.78■□□□□ 0.28
ERCC3P19447 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
ERCC3P19447 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 ST20-AS1-201ENST00000560255 4223 ntBASIC16.78■□□□□ 0.28
ERCC3P19447 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
ERCC3P19447 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
ERCC3P19447 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.78■□□□□ 0.28
ERCC3P19447 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ERCC3P19447 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 AL136172.1-201ENST00000598590 1394 ntBASIC16.77■□□□□ 0.28
ERCC3P19447 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms