Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TPM1P09493 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.05■□□□□ 0.16
TPM1P09493 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
TPM1P09493 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TPM1P09493 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TPM1P09493 BEND3P3-201ENST00000611030 2440 ntBASIC16.05■□□□□ 0.16
TPM1P09493 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TPM1P09493 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TPM1P09493 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC16.05■□□□□ 0.16
TPM1P09493 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC16.05■□□□□ 0.16
TPM1P09493 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TPM1P09493 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 MIR497HG-202ENST00000572453 3838 ntBASIC16.04■□□□□ 0.16
TPM1P09493 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TPM1P09493 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TPM1P09493 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.04■□□□□ 0.16
TPM1P09493 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.04■□□□□ 0.16
TPM1P09493 AL442647.2-201ENST00000429864 857 ntBASIC16.04■□□□□ 0.16
TPM1P09493 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC16.04■□□□□ 0.16
TPM1P09493 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.04■□□□□ 0.16
TPM1P09493 AC103988.2-201ENST00000561804 725 ntBASIC16.04■□□□□ 0.16
TPM1P09493 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TPM1P09493 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.04■□□□□ 0.16
TPM1P09493 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.04■□□□□ 0.16
TPM1P09493 KHSRPP1-201ENST00000427983 1768 ntBASIC16.04■□□□□ 0.16
TPM1P09493 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
TPM1P09493 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.04■□□□□ 0.16
TPM1P09493 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TPM1P09493 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TPM1P09493 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.03■□□□□ 0.16
TPM1P09493 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
TPM1P09493 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
TPM1P09493 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.03■□□□□ 0.16
TPM1P09493 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC16.03■□□□□ 0.16
TPM1P09493 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 SPDYE19P-201ENST00000338590 713 ntBASIC16.03■□□□□ 0.16
TPM1P09493 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
TPM1P09493 ACTBP8-201ENST00000403258 1108 ntBASIC16.03■□□□□ 0.16
TPM1P09493 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.03■□□□□ 0.16
TPM1P09493 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.03■□□□□ 0.16
TPM1P09493 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.03■□□□□ 0.16
TPM1P09493 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.03■□□□□ 0.16
TPM1P09493 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.03■□□□□ 0.16
TPM1P09493 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.03■□□□□ 0.16
TPM1P09493 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.03■□□□□ 0.16
TPM1P09493 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.03■□□□□ 0.16
TPM1P09493 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.03■□□□□ 0.16
TPM1P09493 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.03■□□□□ 0.16
TPM1P09493 AC093028.1-201ENST00000622998 982 ntBASIC16.03■□□□□ 0.16
TPM1P09493 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.03■□□□□ 0.16
TPM1P09493 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
TPM1P09493 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC16.03■□□□□ 0.16
TPM1P09493 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TPM1P09493 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
TPM1P09493 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
TPM1P09493 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TPM1P09493 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TPM1P09493 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms