Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.03□□□□□ -0.16
CLDN9O95484 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC14.03□□□□□ -0.16
CLDN9O95484 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 E2F3P2-201ENST00000447755 1422 ntBASIC14.03□□□□□ -0.16
CLDN9O95484 TMBIM7P-202ENST00000641474 1516 ntBASIC14.03□□□□□ -0.16
CLDN9O95484 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CLDN9O95484 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.03□□□□□ -0.16
CLDN9O95484 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.03□□□□□ -0.16
CLDN9O95484 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.02□□□□□ -0.16
CLDN9O95484 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLDN9O95484 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLDN9O95484 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CLDN9O95484 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLDN9O95484 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLDN9O95484 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLDN9O95484 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLDN9O95484 AC130686.1-201ENST00000622936 2466 ntBASIC14.02□□□□□ -0.16
CLDN9O95484 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLDN9O95484 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLDN9O95484 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14.02□□□□□ -0.16
CLDN9O95484 AC023794.5-201ENST00000564380 2157 ntBASIC14.02□□□□□ -0.16
CLDN9O95484 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.02□□□□□ -0.16
CLDN9O95484 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLDN9O95484 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.16
CLDN9O95484 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLDN9O95484 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CLDN9O95484 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLDN9O95484 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CLDN9O95484 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.02□□□□□ -0.17
CLDN9O95484 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLDN9O95484 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLDN9O95484 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.02□□□□□ -0.17
CLDN9O95484 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CLDN9O95484 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.02□□□□□ -0.17
CLDN9O95484 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.02□□□□□ -0.17
CLDN9O95484 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.02□□□□□ -0.17
CLDN9O95484 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.02□□□□□ -0.17
CLDN9O95484 COX20P2-201ENST00000452636 358 ntBASIC14.02□□□□□ -0.17
CLDN9O95484 AC106886.1-201ENST00000568660 600 ntBASIC14.02□□□□□ -0.17
CLDN9O95484 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.02□□□□□ -0.17
CLDN9O95484 AC008687.7-202ENST00000637404 953 ntBASIC14.02□□□□□ -0.17
CLDN9O95484 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CLDN9O95484 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLDN9O95484 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.02□□□□□ -0.17
CLDN9O95484 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.02□□□□□ -0.17
CLDN9O95484 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.02□□□□□ -0.17
CLDN9O95484 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.02□□□□□ -0.17
CLDN9O95484 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLDN9O95484 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC14.02□□□□□ -0.17
CLDN9O95484 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CLDN9O95484 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.02□□□□□ -0.17
CLDN9O95484 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.01□□□□□ -0.17
CLDN9O95484 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.01□□□□□ -0.17
CLDN9O95484 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.01□□□□□ -0.17
CLDN9O95484 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CLDN9O95484 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 AC111170.3-201ENST00000624282 2464 ntBASIC14.01□□□□□ -0.17
CLDN9O95484 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.01□□□□□ -0.17
CLDN9O95484 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.01□□□□□ -0.17
CLDN9O95484 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.01□□□□□ -0.17
CLDN9O95484 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLDN9O95484 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.01□□□□□ -0.17
CLDN9O95484 AC026954.1-201ENST00000429771 1293 ntBASIC14.01□□□□□ -0.17
CLDN9O95484 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.01□□□□□ -0.17
CLDN9O95484 AL157407.1-201ENST00000435784 904 ntBASIC14.01□□□□□ -0.17
CLDN9O95484 AL645933.1-201ENST00000440087 609 ntBASIC14.01□□□□□ -0.17
CLDN9O95484 AC234783.1-201ENST00000441761 496 ntBASIC14.01□□□□□ -0.17
CLDN9O95484 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.01□□□□□ -0.17
CLDN9O95484 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.01□□□□□ -0.17
CLDN9O95484 CTBP2P5-201ENST00000454986 1264 ntBASIC14.01□□□□□ -0.17
CLDN9O95484 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.01□□□□□ -0.17
CLDN9O95484 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.01□□□□□ -0.17
CLDN9O95484 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.01□□□□□ -0.17
CLDN9O95484 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.01□□□□□ -0.17
CLDN9O95484 MIR6720-201ENST00000611664 98 ntBASIC14.01□□□□□ -0.17
CLDN9O95484 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLDN9O95484 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms