Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
SIX3O95343 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.18□□□□□ -0.14
SIX3O95343 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.18□□□□□ -0.14
SIX3O95343 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.18□□□□□ -0.14
SIX3O95343 AC006001.1-201ENST00000325130 474 ntBASIC14.18□□□□□ -0.14
SIX3O95343 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.18□□□□□ -0.14
SIX3O95343 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 AL035414.1-201ENST00000451327 857 ntBASIC14.18□□□□□ -0.14
SIX3O95343 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
SIX3O95343 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.18□□□□□ -0.14
SIX3O95343 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.18□□□□□ -0.14
SIX3O95343 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.18□□□□□ -0.14
SIX3O95343 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.18□□□□□ -0.14
SIX3O95343 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.18□□□□□ -0.14
SIX3O95343 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.18□□□□□ -0.14
SIX3O95343 PPY2P-201ENST00000582808 702 ntBASIC14.18□□□□□ -0.14
SIX3O95343 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
SIX3O95343 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.18□□□□□ -0.14
SIX3O95343 AL136301.1-201ENST00000615830 422 ntBASIC14.18□□□□□ -0.14
SIX3O95343 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.18□□□□□ -0.14
SIX3O95343 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 AC015909.5-201ENST00000624336 2266 ntBASIC14.18□□□□□ -0.14
SIX3O95343 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC14.18□□□□□ -0.14
SIX3O95343 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.18□□□□□ -0.14
SIX3O95343 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
SIX3O95343 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
SIX3O95343 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.17□□□□□ -0.14
SIX3O95343 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 STK3-218ENST00000617590 2485 ntTSL 5 BASIC14.17□□□□□ -0.14
SIX3O95343 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.17□□□□□ -0.14
SIX3O95343 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.17□□□□□ -0.14
SIX3O95343 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SIX3O95343 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.17□□□□□ -0.14
SIX3O95343 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.17□□□□□ -0.14
SIX3O95343 CHMP1AP1-201ENST00000445563 662 ntBASIC14.17□□□□□ -0.14
SIX3O95343 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.17□□□□□ -0.14
SIX3O95343 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.17□□□□□ -0.14
SIX3O95343 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.17□□□□□ -0.14
SIX3O95343 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
SIX3O95343 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.17□□□□□ -0.14
SIX3O95343 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.17□□□□□ -0.14
SIX3O95343 AL928654.5-201ENST00000624831 2501 ntBASIC14.17□□□□□ -0.14
SIX3O95343 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
SIX3O95343 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SIX3O95343 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.17□□□□□ -0.14
SIX3O95343 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SIX3O95343 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC14.17□□□□□ -0.14
SIX3O95343 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.17□□□□□ -0.14
SIX3O95343 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SIX3O95343 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC14.16□□□□□ -0.14
SIX3O95343 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.16□□□□□ -0.14
SIX3O95343 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
SIX3O95343 AC015818.8-201ENST00000587907 1519 ntBASIC14.16□□□□□ -0.14
SIX3O95343 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.16□□□□□ -0.14
SIX3O95343 TMBIM7P-202ENST00000641474 1516 ntBASIC14.16□□□□□ -0.14
SIX3O95343 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
SIX3O95343 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SIX3O95343 SHC1P1-201ENST00000425230 1745 ntBASIC14.16□□□□□ -0.14
SIX3O95343 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 MIR326-201ENST00000362220 95 ntBASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms