Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.04□□□□□ -0.16
FOXA1P55317 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
FOXA1P55317 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC14.04□□□□□ -0.16
FOXA1P55317 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
FOXA1P55317 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 AC068760.1-201ENST00000493579 1953 ntBASIC14.03□□□□□ -0.16
FOXA1P55317 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
FOXA1P55317 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC14.03□□□□□ -0.16
FOXA1P55317 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 AGAP12P-201ENST00000585227 2359 ntBASIC14.03□□□□□ -0.16
FOXA1P55317 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 STK25-235ENST00000543554 2556 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
FOXA1P55317 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.03□□□□□ -0.16
FOXA1P55317 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 AL136309.1-201ENST00000403917 691 ntBASIC14.03□□□□□ -0.16
FOXA1P55317 AC010141.1-201ENST00000411585 623 ntBASIC14.03□□□□□ -0.16
FOXA1P55317 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC14.03□□□□□ -0.16
FOXA1P55317 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 AC016694.1-201ENST00000434179 700 ntBASIC14.03□□□□□ -0.16
FOXA1P55317 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.03□□□□□ -0.16
FOXA1P55317 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.03□□□□□ -0.16
FOXA1P55317 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.03□□□□□ -0.16
FOXA1P55317 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.03□□□□□ -0.16
FOXA1P55317 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.03□□□□□ -0.16
FOXA1P55317 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.03□□□□□ -0.16
FOXA1P55317 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 KRT90P-201ENST00000549264 1064 ntBASIC14.03□□□□□ -0.16
FOXA1P55317 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.03□□□□□ -0.16
FOXA1P55317 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
FOXA1P55317 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 AC015936.2-201ENST00000593177 259 ntBASIC14.03□□□□□ -0.16
FOXA1P55317 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.03□□□□□ -0.16
FOXA1P55317 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.03□□□□□ -0.16
FOXA1P55317 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
FOXA1P55317 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC14.03□□□□□ -0.16
FOXA1P55317 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.03□□□□□ -0.16
FOXA1P55317 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 AC027612.1-201ENST00000445234 2395 ntBASIC14.03□□□□□ -0.16
FOXA1P55317 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA1P55317 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA1P55317 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA1P55317 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA1P55317 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA1P55317 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
FOXA1P55317 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.16
FOXA1P55317 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA1P55317 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA1P55317 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC14.02□□□□□ -0.16
FOXA1P55317 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.16
FOXA1P55317 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA1P55317 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.02□□□□□ -0.16
FOXA1P55317 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA1P55317 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms