Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A2P12110 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A2P12110 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A2P12110 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A2P12110 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.36□□□□□ -0.11
COL6A2P12110 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A2P12110 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A2P12110 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
COL6A2P12110 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC14.36□□□□□ -0.11
COL6A2P12110 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A2P12110 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.35□□□□□ -0.11
COL6A2P12110 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC14.35□□□□□ -0.11
COL6A2P12110 C2-206ENST00000442278 2434 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A2P12110 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A2P12110 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.35□□□□□ -0.11
COL6A2P12110 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.35□□□□□ -0.11
COL6A2P12110 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A2P12110 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A2P12110 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
COL6A2P12110 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.35□□□□□ -0.11
COL6A2P12110 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.35□□□□□ -0.11
COL6A2P12110 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A2P12110 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.35□□□□□ -0.11
COL6A2P12110 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.35□□□□□ -0.11
COL6A2P12110 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
COL6A2P12110 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.35□□□□□ -0.11
COL6A2P12110 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.35□□□□□ -0.11
COL6A2P12110 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL6A2P12110 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
COL6A2P12110 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A2P12110 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A2P12110 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A2P12110 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
COL6A2P12110 NCLP1-201ENST00000445357 1963 ntBASIC14.34□□□□□ -0.11
COL6A2P12110 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A2P12110 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A2P12110 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
COL6A2P12110 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A2P12110 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A2P12110 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
COL6A2P12110 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
COL6A2P12110 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A2P12110 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A2P12110 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
COL6A2P12110 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 AL136309.1-201ENST00000403917 691 ntBASIC14.34□□□□□ -0.11
COL6A2P12110 C2orf27AP3-201ENST00000434123 579 ntBASIC14.34□□□□□ -0.11
COL6A2P12110 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.34□□□□□ -0.11
COL6A2P12110 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A2P12110 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A2P12110 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A2P12110 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
COL6A2P12110 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.34□□□□□ -0.11
COL6A2P12110 RN7SL713P-201ENST00000582127 302 ntBASIC14.34□□□□□ -0.11
COL6A2P12110 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.34□□□□□ -0.11
COL6A2P12110 AL354718.3-201ENST00000616414 581 ntBASIC14.34□□□□□ -0.11
COL6A2P12110 CR382287.1-201ENST00000623954 586 ntBASIC14.34□□□□□ -0.11
COL6A2P12110 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A2P12110 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
COL6A2P12110 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms