Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RPS2P36-201ENST00000456516 831 ntBASIC13.24□□□□□ -0.29
HOXD4P09016 RN7SL11P-201ENST00000471305 293 ntBASIC13.24□□□□□ -0.29
HOXD4P09016 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC13.24□□□□□ -0.29
HOXD4P09016 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXD4P09016 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.24□□□□□ -0.29
HOXD4P09016 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC13.24□□□□□ -0.29
HOXD4P09016 NAT9-224ENST00000583757 583 ntTSL 3 BASIC13.24□□□□□ -0.29
HOXD4P09016 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
HOXD4P09016 AL353726.2-201ENST00000623259 884 ntBASIC13.24□□□□□ -0.29
HOXD4P09016 AC128714.1-201ENST00000637035 887 ntBASIC13.24□□□□□ -0.29
HOXD4P09016 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HOXD4P09016 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXD4P09016 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
HOXD4P09016 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HOXD4P09016 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD4P09016 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.24□□□□□ -0.29
HOXD4P09016 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
HOXD4P09016 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
HOXD4P09016 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.23□□□□□ -0.29
HOXD4P09016 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 INE2-201ENST00000630399 1874 ntBASIC13.23□□□□□ -0.29
HOXD4P09016 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
HOXD4P09016 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
HOXD4P09016 AL008718.2-201ENST00000609206 1313 ntBASIC13.23□□□□□ -0.29
HOXD4P09016 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXD4P09016 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXD4P09016 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.23□□□□□ -0.29
HOXD4P09016 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD4P09016 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD4P09016 FTLP1-201ENST00000449155 526 ntBASIC13.23□□□□□ -0.29
HOXD4P09016 AL353637.1-201ENST00000451571 732 ntBASIC13.23□□□□□ -0.29
HOXD4P09016 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD4P09016 RPL18P13-201ENST00000478088 569 ntBASIC13.23□□□□□ -0.29
HOXD4P09016 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXD4P09016 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXD4P09016 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.23□□□□□ -0.29
HOXD4P09016 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC13.23□□□□□ -0.29
HOXD4P09016 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.23□□□□□ -0.29
HOXD4P09016 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXD4P09016 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC13.23□□□□□ -0.29
HOXD4P09016 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC13.23□□□□□ -0.29
HOXD4P09016 SNORD3B-2-202ENST00000571722 791 ntBASIC13.23□□□□□ -0.29
HOXD4P09016 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD4P09016 SPCS2P2-201ENST00000603270 608 ntBASIC13.23□□□□□ -0.29
HOXD4P09016 NAP1L6-202ENST00000641404 1222 ntBASIC13.23□□□□□ -0.29
HOXD4P09016 AL157791.1-201ENST00000553667 1699 ntBASIC13.23□□□□□ -0.29
HOXD4P09016 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
HOXD4P09016 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXD4P09016 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD4P09016 ZBED1P1-201ENST00000502364 1930 ntBASIC13.23□□□□□ -0.29
HOXD4P09016 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD4P09016 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD4P09016 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
HOXD4P09016 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD4P09016 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXD4P09016 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
HOXD4P09016 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
HOXD4P09016 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
HOXD4P09016 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC13.22□□□□□ -0.29
HOXD4P09016 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HOXD4P09016 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms