Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
TNFP01375 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC14.09□□□□□ -0.15
TNFP01375 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
TNFP01375 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.09□□□□□ -0.15
TNFP01375 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.09□□□□□ -0.15
TNFP01375 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
TNFP01375 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.09□□□□□ -0.15
TNFP01375 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 AL512430.1-201ENST00000392575 860 ntBASIC14.09□□□□□ -0.15
TNFP01375 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC14.09□□□□□ -0.15
TNFP01375 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC14.09□□□□□ -0.15
TNFP01375 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 AC098935.1-201ENST00000446057 611 ntBASIC14.09□□□□□ -0.15
TNFP01375 FTH1P22-201ENST00000456305 520 ntBASIC14.09□□□□□ -0.15
TNFP01375 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.09□□□□□ -0.15
TNFP01375 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC14.09□□□□□ -0.15
TNFP01375 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC14.09□□□□□ -0.15
TNFP01375 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC14.09□□□□□ -0.15
TNFP01375 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.09□□□□□ -0.15
TNFP01375 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC14.09□□□□□ -0.15
TNFP01375 AL031713.1-201ENST00000564813 661 ntBASIC14.09□□□□□ -0.15
TNFP01375 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.09□□□□□ -0.15
TNFP01375 MIR3147-201ENST00000577811 66 ntBASIC14.09□□□□□ -0.15
TNFP01375 AC005632.3-201ENST00000605544 308 ntBASIC14.09□□□□□ -0.15
TNFP01375 AC104506.1-201ENST00000609247 429 ntBASIC14.09□□□□□ -0.15
TNFP01375 COX6A1P2-201ENST00000620597 330 ntBASIC14.09□□□□□ -0.15
TNFP01375 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
TNFP01375 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.09□□□□□ -0.15
TNFP01375 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
TNFP01375 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TNFP01375 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
TNFP01375 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
TNFP01375 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
TNFP01375 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
TNFP01375 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
TNFP01375 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
TNFP01375 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.15
TNFP01375 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
TNFP01375 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
TNFP01375 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.16
TNFP01375 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC14.08□□□□□ -0.16
TNFP01375 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.08□□□□□ -0.16
TNFP01375 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
TNFP01375 AC046158.3-201ENST00000624947 2558 ntBASIC14.08□□□□□ -0.16
TNFP01375 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.08□□□□□ -0.16
TNFP01375 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
TNFP01375 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.08□□□□□ -0.16
TNFP01375 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.08□□□□□ -0.16
TNFP01375 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC14.08□□□□□ -0.16
TNFP01375 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 AL627422.1-201ENST00000434104 580 ntBASIC14.08□□□□□ -0.16
TNFP01375 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC14.08□□□□□ -0.16
TNFP01375 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC14.08□□□□□ -0.16
TNFP01375 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC14.08□□□□□ -0.16
TNFP01375 CHCHD2P9-201ENST00000461726 456 ntBASIC14.08□□□□□ -0.16
TNFP01375 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC14.08□□□□□ -0.16
TNFP01375 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.08□□□□□ -0.16
TNFP01375 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.08□□□□□ -0.16
TNFP01375 AC073352.2-201ENST00000609385 439 ntBASIC14.08□□□□□ -0.16
TNFP01375 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.08□□□□□ -0.16
TNFP01375 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.08□□□□□ -0.16
TNFP01375 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
TNFP01375 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms