Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
RNF40O75150 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RNF40O75150 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
RNF40O75150 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
RNF40O75150 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RNF40O75150 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RNF40O75150 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RNF40O75150 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.8■□□□□ 0.12
RNF40O75150 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RNF40O75150 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RNF40O75150 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
RNF40O75150 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 AL139385.1-201ENST00000611744 3272 ntBASIC15.79■□□□□ 0.12
RNF40O75150 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF40O75150 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF40O75150 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 USP31-203ENST00000567975 2142 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF40O75150 AC118758.2-201ENST00000614242 2813 ntBASIC15.79■□□□□ 0.12
RNF40O75150 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF40O75150 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 AC006001.1-201ENST00000325130 474 ntBASIC15.79■□□□□ 0.12
RNF40O75150 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
RNF40O75150 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF40O75150 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.79■□□□□ 0.12
RNF40O75150 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.79■□□□□ 0.12
RNF40O75150 Z93015.1-201ENST00000451718 390 ntBASIC15.79■□□□□ 0.12
RNF40O75150 KRT8P13-201ENST00000463294 1010 ntBASIC15.79■□□□□ 0.12
RNF40O75150 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.79■□□□□ 0.12
RNF40O75150 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF40O75150 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 AC145423.3-201ENST00000615987 467 ntBASIC15.79■□□□□ 0.12
RNF40O75150 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF40O75150 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
RNF40O75150 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RNF40O75150 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.79■□□□□ 0.12
RNF40O75150 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC15.79■□□□□ 0.12
RNF40O75150 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
RNF40O75150 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF40O75150 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
RNF40O75150 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
RNF40O75150 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
RNF40O75150 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RNF40O75150 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC15.78■□□□□ 0.12
RNF40O75150 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
RNF40O75150 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 KRT8P35-201ENST00000483942 1338 ntBASIC15.78■□□□□ 0.12
RNF40O75150 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF40O75150 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF40O75150 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 IFNA1-201ENST00000276927 863 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
RNF40O75150 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF40O75150 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.78■□□□□ 0.12
RNF40O75150 AL603841.1-201ENST00000430516 664 ntBASIC15.78■□□□□ 0.12
RNF40O75150 KATNBL1P2-201ENST00000433311 835 ntBASIC15.78■□□□□ 0.12
RNF40O75150 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF40O75150 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 147 ms