Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZC3H4Q9UPT8 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
ZC3H4Q9UPT8 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZC3H4Q9UPT8 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZC3H4Q9UPT8 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZC3H4Q9UPT8 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZC3H4Q9UPT8 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZC3H4Q9UPT8 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.31■□□□□ 0.36
ZC3H4Q9UPT8 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.31■□□□□ 0.36
ZC3H4Q9UPT8 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 AC092135.3-201ENST00000624151 1846 ntBASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 SIRPB3P-201ENST00000340424 1216 ntBASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 AL137244.1-201ENST00000422931 865 ntBASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 AC025186.1-201ENST00000478174 870 ntBASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 NT5C-204ENST00000578337 582 ntTSL 2 BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 AL009176.1-201ENST00000607876 650 ntBASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 AC004466.2-201ENST00000614749 516 ntBASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 AC005274.1-201ENST00000623460 802 ntBASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.3■□□□□ 0.36
ZC3H4Q9UPT8 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 AL009178.2-201ENST00000597278 2719 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 CCL25-202ENST00000315626 450 ntTSL 2 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 AL157823.1-201ENST00000403727 628 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 BX679664.3-201ENST00000414070 555 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 OR52M2P-201ENST00000414298 959 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 CDCA4P4-201ENST00000435216 680 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 MAGEA7P-201ENST00000436482 942 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 GOLGA6L16P-201ENST00000441780 1299 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 AC113935.1-201ENST00000471722 555 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 ALG1L7P-201ENST00000502317 768 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 PRSS3P1-201ENST00000503996 742 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 CSTP2-201ENST00000610599 398 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 AC138035.3-201ENST00000622706 2791 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 AC105250.1-201ENST00000509378 2057 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 AC023908.3-201ENST00000564211 3047 ntBASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZC3H4Q9UPT8 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.28■□□□□ 0.36
ZC3H4Q9UPT8 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.28■□□□□ 0.36
ZC3H4Q9UPT8 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZC3H4Q9UPT8 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZC3H4Q9UPT8 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ZC3H4Q9UPT8 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZC3H4Q9UPT8 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
ZC3H4Q9UPT8 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZC3H4Q9UPT8 OR10N1P-201ENST00000392758 869 ntBASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms