Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.31■□□□□ 0.04
USP46P62068 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP46P62068 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC15.31■□□□□ 0.04
USP46P62068 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.31■□□□□ 0.04
USP46P62068 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP46P62068 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC15.31■□□□□ 0.04
USP46P62068 UPF3AP2-201ENST00000457924 1132 ntBASIC15.31■□□□□ 0.04
USP46P62068 AC007688.1-201ENST00000475592 759 ntBASIC15.31■□□□□ 0.04
USP46P62068 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC15.31■□□□□ 0.04
USP46P62068 RNA5SP423-201ENST00000517127 109 ntBASIC15.31■□□□□ 0.04
USP46P62068 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.31■□□□□ 0.04
USP46P62068 AC006518.1-201ENST00000541449 943 ntBASIC15.31■□□□□ 0.04
USP46P62068 AC003686.1-201ENST00000550956 1034 ntBASIC15.31■□□□□ 0.04
USP46P62068 AL161670.2-201ENST00000557650 1227 ntBASIC15.31■□□□□ 0.04
USP46P62068 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC15.31■□□□□ 0.04
USP46P62068 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP46P62068 FGFR3P5-201ENST00000564496 886 ntBASIC15.31■□□□□ 0.04
USP46P62068 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC15.31■□□□□ 0.04
USP46P62068 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC15.31■□□□□ 0.04
USP46P62068 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.31■□□□□ 0.04
USP46P62068 AL034417.3-201ENST00000641100 1043 ntBASIC15.31■□□□□ 0.04
USP46P62068 NAP1L6-202ENST00000641404 1222 ntBASIC15.31■□□□□ 0.04
USP46P62068 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC15.31■□□□□ 0.04
USP46P62068 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
USP46P62068 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP46P62068 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP46P62068 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC15.31■□□□□ 0.04
USP46P62068 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP46P62068 KRT8P21-201ENST00000430398 1491 ntBASIC15.31■□□□□ 0.04
USP46P62068 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.31■□□□□ 0.04
USP46P62068 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP46P62068 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP46P62068 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP46P62068 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.31■□□□□ 0.04
USP46P62068 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
USP46P62068 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.31■□□□□ 0.04
USP46P62068 AC005912.2-201ENST00000619492 2400 ntBASIC15.31■□□□□ 0.04
USP46P62068 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP46P62068 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP46P62068 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
USP46P62068 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC15.3■□□□□ 0.04
USP46P62068 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.3■□□□□ 0.04
USP46P62068 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.3■□□□□ 0.04
USP46P62068 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC15.3■□□□□ 0.04
USP46P62068 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.3■□□□□ 0.04
USP46P62068 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC15.3■□□□□ 0.04
USP46P62068 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.3■□□□□ 0.04
USP46P62068 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 XBP1P1-201ENST00000436573 652 ntBASIC15.3■□□□□ 0.04
USP46P62068 AL133466.1-201ENST00000447582 150 ntBASIC15.3■□□□□ 0.04
USP46P62068 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC15.3■□□□□ 0.04
USP46P62068 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.3■□□□□ 0.04
USP46P62068 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC15.3■□□□□ 0.04
USP46P62068 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC15.3■□□□□ 0.04
USP46P62068 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
USP46P62068 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
USP46P62068 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
USP46P62068 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.3■□□□□ 0.04
USP46P62068 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
USP46P62068 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP46P62068 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
USP46P62068 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.3■□□□□ 0.04
USP46P62068 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
USP46P62068 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.3■□□□□ 0.04
USP46P62068 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
USP46P62068 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
USP46P62068 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
USP46P62068 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
USP46P62068 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC15.29■□□□□ 0.04
USP46P62068 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
USP46P62068 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
USP46P62068 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.29■□□□□ 0.04
USP46P62068 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 LRTM1-201ENST00000273286 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.29■□□□□ 0.04
USP46P62068 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP46P62068 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms