Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LIM2P55344 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
LIM2P55344 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC13.78□□□□□ -0.2
LIM2P55344 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
LIM2P55344 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
LIM2P55344 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
LIM2P55344 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
LIM2P55344 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
LIM2P55344 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
LIM2P55344 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
LIM2P55344 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
LIM2P55344 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
LIM2P55344 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
LIM2P55344 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
LIM2P55344 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.77□□□□□ -0.21
LIM2P55344 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
LIM2P55344 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.77□□□□□ -0.21
LIM2P55344 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
LIM2P55344 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.77□□□□□ -0.21
LIM2P55344 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.77□□□□□ -0.21
LIM2P55344 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.77□□□□□ -0.21
LIM2P55344 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.77□□□□□ -0.21
LIM2P55344 AL161932.2-201ENST00000435436 679 ntBASIC13.77□□□□□ -0.21
LIM2P55344 ACTBP11-201ENST00000436287 1126 ntBASIC13.77□□□□□ -0.21
LIM2P55344 AC018735.1-201ENST00000437208 1502 ntBASIC13.77□□□□□ -0.21
LIM2P55344 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.77□□□□□ -0.21
LIM2P55344 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.77□□□□□ -0.21
LIM2P55344 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.77□□□□□ -0.21
LIM2P55344 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
LIM2P55344 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.77□□□□□ -0.21
LIM2P55344 AL160314.3-201ENST00000556041 767 ntBASIC13.77□□□□□ -0.21
LIM2P55344 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.77□□□□□ -0.21
LIM2P55344 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC13.77□□□□□ -0.21
LIM2P55344 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.77□□□□□ -0.21
LIM2P55344 RN7SL219P-201ENST00000582872 296 ntBASIC13.77□□□□□ -0.21
LIM2P55344 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.77□□□□□ -0.21
LIM2P55344 BNIP3P13-201ENST00000599968 566 ntBASIC13.77□□□□□ -0.21
LIM2P55344 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC13.77□□□□□ -0.21
LIM2P55344 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
LIM2P55344 AC064801.2-201ENST00000625052 1303 ntBASIC13.77□□□□□ -0.21
LIM2P55344 AC144522.1-201ENST00000625111 1658 ntBASIC13.77□□□□□ -0.21
LIM2P55344 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.77□□□□□ -0.21
LIM2P55344 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC13.77□□□□□ -0.21
LIM2P55344 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LIM2P55344 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.77□□□□□ -0.21
LIM2P55344 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
LIM2P55344 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
LIM2P55344 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC13.77□□□□□ -0.21
LIM2P55344 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
LIM2P55344 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
LIM2P55344 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
LIM2P55344 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.76□□□□□ -0.21
LIM2P55344 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
LIM2P55344 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.76□□□□□ -0.21
LIM2P55344 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
LIM2P55344 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.76□□□□□ -0.21
LIM2P55344 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.76□□□□□ -0.21
LIM2P55344 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LIM2P55344 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
LIM2P55344 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.76□□□□□ -0.21
LIM2P55344 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
LIM2P55344 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC13.76□□□□□ -0.21
LIM2P55344 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.76□□□□□ -0.21
LIM2P55344 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC13.76□□□□□ -0.21
LIM2P55344 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LIM2P55344 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.76□□□□□ -0.21
LIM2P55344 AC104306.2-201ENST00000451877 341 ntBASIC13.76□□□□□ -0.21
LIM2P55344 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.76□□□□□ -0.21
LIM2P55344 RPL18P13-201ENST00000478088 569 ntBASIC13.76□□□□□ -0.21
LIM2P55344 AC006122.1-201ENST00000493323 440 ntBASIC13.76□□□□□ -0.21
LIM2P55344 AC108725.1-201ENST00000495472 409 ntBASIC13.76□□□□□ -0.21
LIM2P55344 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.76□□□□□ -0.21
LIM2P55344 AC022748.3-201ENST00000621828 275 ntBASIC13.76□□□□□ -0.21
LIM2P55344 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.76□□□□□ -0.21
LIM2P55344 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC13.76□□□□□ -0.21
LIM2P55344 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
LIM2P55344 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms