Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC17.04■□□□□ 0.32
MRE11P49959 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.04■□□□□ 0.32
MRE11P49959 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC17.04■□□□□ 0.32
MRE11P49959 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
MRE11P49959 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC17.04■□□□□ 0.32
MRE11P49959 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC17.04■□□□□ 0.32
MRE11P49959 MKRN5P-201ENST00000445263 1467 ntBASIC17.04■□□□□ 0.32
MRE11P49959 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC17.04■□□□□ 0.32
MRE11P49959 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC17.03■□□□□ 0.32
MRE11P49959 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
MRE11P49959 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.03■□□□□ 0.32
MRE11P49959 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
MRE11P49959 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
MRE11P49959 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
MRE11P49959 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC17.03■□□□□ 0.32
MRE11P49959 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
MRE11P49959 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.03■□□□□ 0.32
MRE11P49959 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.03■□□□□ 0.32
MRE11P49959 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
MRE11P49959 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 SNX29P1-201ENST00000548357 1007 ntBASIC17.03■□□□□ 0.32
MRE11P49959 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.03■□□□□ 0.32
MRE11P49959 AC026979.3-201ENST00000607315 403 ntBASIC17.03■□□□□ 0.32
MRE11P49959 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
MRE11P49959 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
MRE11P49959 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.03■□□□□ 0.32
MRE11P49959 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC17.03■□□□□ 0.32
MRE11P49959 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC17.03■□□□□ 0.32
MRE11P49959 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.03■□□□□ 0.32
MRE11P49959 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
MRE11P49959 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 HSPA8P5-201ENST00000456928 2069 ntBASIC17.03■□□□□ 0.32
MRE11P49959 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
MRE11P49959 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.03■□□□□ 0.32
MRE11P49959 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.03■□□□□ 0.32
MRE11P49959 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC17.03■□□□□ 0.32
MRE11P49959 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
MRE11P49959 AC215219.1-201ENST00000400706 1817 ntBASIC17.03■□□□□ 0.32
MRE11P49959 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MRE11P49959 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MRE11P49959 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MRE11P49959 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MRE11P49959 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MRE11P49959 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.02■□□□□ 0.32
MRE11P49959 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
MRE11P49959 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
MRE11P49959 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC17.02■□□□□ 0.32
MRE11P49959 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
MRE11P49959 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC17.02■□□□□ 0.32
MRE11P49959 AL022323.5-201ENST00000624101 2059 ntBASIC17.02■□□□□ 0.32
MRE11P49959 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MRE11P49959 AC024075.2-201ENST00000598112 1473 ntBASIC17.02■□□□□ 0.32
MRE11P49959 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
MRE11P49959 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MRE11P49959 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MRE11P49959 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.02■□□□□ 0.32
MRE11P49959 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.02■□□□□ 0.32
MRE11P49959 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.02■□□□□ 0.32
MRE11P49959 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.02■□□□□ 0.32
MRE11P49959 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MRE11P49959 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.02■□□□□ 0.32
MRE11P49959 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.02■□□□□ 0.32
MRE11P49959 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
MRE11P49959 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.02■□□□□ 0.32
MRE11P49959 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.02■□□□□ 0.32
MRE11P49959 AL161645.1-201ENST00000622716 1255 ntBASIC17.02■□□□□ 0.32
MRE11P49959 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.32
MRE11P49959 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC17.02■□□□□ 0.32
MRE11P49959 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC17.02■□□□□ 0.32
MRE11P49959 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MRE11P49959 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
MRE11P49959 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
MRE11P49959 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MRE11P49959 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms