Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
LIG3P49916 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.4■□□□□ 0.06
LIG3P49916 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC15.4■□□□□ 0.06
LIG3P49916 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC15.4■□□□□ 0.06
LIG3P49916 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
LIG3P49916 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
LIG3P49916 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LIG3P49916 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
LIG3P49916 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC15.39■□□□□ 0.05
LIG3P49916 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.39■□□□□ 0.05
LIG3P49916 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
LIG3P49916 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC15.39■□□□□ 0.05
LIG3P49916 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.39■□□□□ 0.05
LIG3P49916 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC15.39■□□□□ 0.05
LIG3P49916 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 AC005229.1-201ENST00000392885 409 ntBASIC15.39■□□□□ 0.05
LIG3P49916 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 AC234783.1-201ENST00000441761 496 ntBASIC15.39■□□□□ 0.05
LIG3P49916 AC244107.1-201ENST00000442033 332 ntBASIC15.39■□□□□ 0.05
LIG3P49916 AL355864.2-201ENST00000447420 863 ntBASIC15.39■□□□□ 0.05
LIG3P49916 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.39■□□□□ 0.05
LIG3P49916 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.39■□□□□ 0.05
LIG3P49916 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.39■□□□□ 0.05
LIG3P49916 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.39■□□□□ 0.05
LIG3P49916 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.39■□□□□ 0.05
LIG3P49916 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
LIG3P49916 AC017083.2-201ENST00000608069 979 ntBASIC15.39■□□□□ 0.05
LIG3P49916 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.39■□□□□ 0.05
LIG3P49916 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
LIG3P49916 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC15.39■□□□□ 0.05
LIG3P49916 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC15.39■□□□□ 0.05
LIG3P49916 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.39■□□□□ 0.05
LIG3P49916 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
LIG3P49916 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.39■□□□□ 0.05
LIG3P49916 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
LIG3P49916 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LIG3P49916 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
LIG3P49916 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC15.38■□□□□ 0.05
LIG3P49916 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.38■□□□□ 0.05
LIG3P49916 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LIG3P49916 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
LIG3P49916 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LIG3P49916 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.38■□□□□ 0.05
LIG3P49916 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC15.38■□□□□ 0.05
LIG3P49916 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LIG3P49916 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC15.38■□□□□ 0.05
LIG3P49916 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LIG3P49916 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
LIG3P49916 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC15.38■□□□□ 0.05
LIG3P49916 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LIG3P49916 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LIG3P49916 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LIG3P49916 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LIG3P49916 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
LIG3P49916 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
LIG3P49916 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.38■□□□□ 0.05
LIG3P49916 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.38■□□□□ 0.05
LIG3P49916 AC004066.1-201ENST00000502488 802 ntBASIC15.38■□□□□ 0.05
LIG3P49916 AC022137.2-201ENST00000503482 481 ntBASIC15.38■□□□□ 0.05
LIG3P49916 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.38■□□□□ 0.05
LIG3P49916 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.38■□□□□ 0.05
LIG3P49916 AL008721.1-201ENST00000609964 604 ntBASIC15.38■□□□□ 0.05
LIG3P49916 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.38■□□□□ 0.05
LIG3P49916 AP005019.2-201ENST00000615104 511 ntBASIC15.38■□□□□ 0.05
LIG3P49916 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC15.38■□□□□ 0.05
LIG3P49916 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
LIG3P49916 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC15.38■□□□□ 0.05
LIG3P49916 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.38■□□□□ 0.05
LIG3P49916 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LIG3P49916 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LIG3P49916 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LIG3P49916 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.38■□□□□ 0.05
LIG3P49916 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms