Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC008620.2-201ENST00000510294 1569 ntBASIC18.7■□□□□ 0.58
COL3A1P02461 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC18.7■□□□□ 0.58
COL3A1P02461 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC18.7■□□□□ 0.58
COL3A1P02461 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC18.7■□□□□ 0.58
COL3A1P02461 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL3A1P02461 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL3A1P02461 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC18.7■□□□□ 0.58
COL3A1P02461 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC18.7■□□□□ 0.58
COL3A1P02461 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL3A1P02461 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC18.7■□□□□ 0.58
COL3A1P02461 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
COL3A1P02461 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL3A1P02461 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
COL3A1P02461 AL357563.1-201ENST00000404728 395 ntBASIC18.7■□□□□ 0.58
COL3A1P02461 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC18.7■□□□□ 0.58
COL3A1P02461 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
COL3A1P02461 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC18.7■□□□□ 0.58
COL3A1P02461 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC18.7■□□□□ 0.58
COL3A1P02461 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
COL3A1P02461 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC18.7■□□□□ 0.58
COL3A1P02461 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC18.7■□□□□ 0.58
COL3A1P02461 AC105137.3-201ENST00000617588 984 ntBASIC18.7■□□□□ 0.58
COL3A1P02461 MIR6858-201ENST00000620733 67 ntBASIC18.7■□□□□ 0.58
COL3A1P02461 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL3A1P02461 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL3A1P02461 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC18.69■□□□□ 0.58
COL3A1P02461 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
COL3A1P02461 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL3A1P02461 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC18.69■□□□□ 0.58
COL3A1P02461 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
COL3A1P02461 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL3A1P02461 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL3A1P02461 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL3A1P02461 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
COL3A1P02461 AC090502.4-201ENST00000551714 1386 ntBASIC18.69■□□□□ 0.58
COL3A1P02461 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL3A1P02461 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.69■□□□□ 0.58
COL3A1P02461 AC089987.1-201ENST00000551654 2209 ntBASIC18.69■□□□□ 0.58
COL3A1P02461 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL3A1P02461 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL3A1P02461 SAT1-201ENST00000379251 801 ntTSL 2 BASIC18.69■□□□□ 0.58
COL3A1P02461 SAT1-202ENST00000379253 909 ntTSL 2 BASIC18.69■□□□□ 0.58
COL3A1P02461 SAT1-203ENST00000379254 868 ntTSL 3 BASIC18.69■□□□□ 0.58
COL3A1P02461 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL3A1P02461 IGF1-203ENST00000392904 761 ntTSL 5 BASIC18.69■□□□□ 0.58
COL3A1P02461 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC18.69■□□□□ 0.58
COL3A1P02461 OR52M2P-201ENST00000414298 959 ntBASIC18.69■□□□□ 0.58
COL3A1P02461 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL3A1P02461 AC005722.1-201ENST00000431878 964 ntBASIC18.69■□□□□ 0.58
COL3A1P02461 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC18.69■□□□□ 0.58
COL3A1P02461 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC18.69■□□□□ 0.58
COL3A1P02461 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC18.69■□□□□ 0.58
COL3A1P02461 IGHV3-37-201ENST00000518544 340 ntBASIC18.69■□□□□ 0.58
COL3A1P02461 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC18.69■□□□□ 0.58
COL3A1P02461 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC18.69■□□□□ 0.58
COL3A1P02461 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
COL3A1P02461 AC007250.1-201ENST00000608934 338 ntBASIC18.69■□□□□ 0.58
COL3A1P02461 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC18.69■□□□□ 0.58
COL3A1P02461 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL3A1P02461 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL3A1P02461 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
COL3A1P02461 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL3A1P02461 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
COL3A1P02461 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL3A1P02461 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
COL3A1P02461 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL3A1P02461 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
COL3A1P02461 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL3A1P02461 AC023794.5-201ENST00000564380 2157 ntBASIC18.68■□□□□ 0.58
COL3A1P02461 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL3A1P02461 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC18.68■□□□□ 0.58
COL3A1P02461 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL3A1P02461 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL3A1P02461 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL3A1P02461 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL3A1P02461 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC18.68■□□□□ 0.58
COL3A1P02461 RPL17P11-201ENST00000417593 544 ntBASIC18.68■□□□□ 0.58
COL3A1P02461 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC18.68■□□□□ 0.58
COL3A1P02461 DPY19L2P5-201ENST00000456300 331 ntBASIC18.68■□□□□ 0.58
COL3A1P02461 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC18.68■□□□□ 0.58
COL3A1P02461 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL3A1P02461 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
COL3A1P02461 AP005264.5-201ENST00000590066 467 ntBASIC18.68■□□□□ 0.58
COL3A1P02461 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL3A1P02461 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
COL3A1P02461 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC18.68■□□□□ 0.58
COL3A1P02461 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC18.68■□□□□ 0.58
COL3A1P02461 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms