Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
PCDHGA1Q9Y5H4 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
PCDHGA1Q9Y5H4 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHGA1Q9Y5H4 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 DUX4L2-201ENST00000561772 1275 ntBASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 DUX4L6-201ENST00000626483 1275 ntBASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 DUX4L1-201ENST00000627662 1275 ntBASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 DUX4L8-201ENST00000629013 1275 ntBASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 DUX4L3-201ENST00000630187 1275 ntBASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 DUX4L7-201ENST00000630678 1275 ntBASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 DUX4L5-201ENST00000630834 1275 ntBASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.9■■□□□ 1.1
PCDHGA1Q9Y5H4 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
PCDHGA1Q9Y5H4 AL161729.1-201ENST00000604104 1402 ntBASIC21.89■■□□□ 1.1
PCDHGA1Q9Y5H4 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
PCDHGA1Q9Y5H4 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
PCDHGA1Q9Y5H4 TSPY26P-201ENST00000476365 1326 ntBASIC21.89■■□□□ 1.1
PCDHGA1Q9Y5H4 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDHGA1Q9Y5H4 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.89■■□□□ 1.09
PCDHGA1Q9Y5H4 pRNA.6-201ENST00000610482 90 ntBASIC21.89■■□□□ 1.09
PCDHGA1Q9Y5H4 pRNA.5-201ENST00000612139 90 ntBASIC21.89■■□□□ 1.09
PCDHGA1Q9Y5H4 pRNA.11-201ENST00000618423 90 ntBASIC21.89■■□□□ 1.09
PCDHGA1Q9Y5H4 pRNA.13-201ENST00000619112 90 ntBASIC21.89■■□□□ 1.09
PCDHGA1Q9Y5H4 AL031602.1-201ENST00000633169 911 ntBASIC21.89■■□□□ 1.09
PCDHGA1Q9Y5H4 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDHGA1Q9Y5H4 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDHGA1Q9Y5H4 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PCDHGA1Q9Y5H4 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 AC092437.1-201ENST00000624794 1048 ntBASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHGA1Q9Y5H4 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.87■■□□□ 1.09
PCDHGA1Q9Y5H4 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.87■■□□□ 1.09
PCDHGA1Q9Y5H4 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.87■■□□□ 1.09
PCDHGA1Q9Y5H4 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHGA1Q9Y5H4 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.87■■□□□ 1.09
PCDHGA1Q9Y5H4 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHGA1Q9Y5H4 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHGA1Q9Y5H4 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
PCDHGA1Q9Y5H4 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHGA1Q9Y5H4 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHGA1Q9Y5H4 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
PCDHGA1Q9Y5H4 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHGA1Q9Y5H4 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
PCDHGA1Q9Y5H4 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHGA1Q9Y5H4 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHGA1Q9Y5H4 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHGA1Q9Y5H4 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHGA1Q9Y5H4 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHGA1Q9Y5H4 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHGA1Q9Y5H4 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.86■■□□□ 1.09
PCDHGA1Q9Y5H4 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 SLC6A10P-202ENST00000431994 2058 ntBASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.85■■□□□ 1.09
PCDHGA1Q9Y5H4 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHGA1Q9Y5H4 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
PCDHGA1Q9Y5H4 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.84■■□□□ 1.09
PCDHGA1Q9Y5H4 MIR572-201ENST00000384983 95 ntBASIC21.84■■□□□ 1.09
PCDHGA1Q9Y5H4 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
PCDHGA1Q9Y5H4 IGHV3-19-201ENST00000521488 291 ntBASIC21.84■■□□□ 1.09
PCDHGA1Q9Y5H4 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.84■■□□□ 1.09
PCDHGA1Q9Y5H4 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.84■■□□□ 1.09
PCDHGA1Q9Y5H4 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.84■■□□□ 1.09
PCDHGA1Q9Y5H4 AL354811.1-201ENST00000610286 706 ntBASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms