Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN3Q9H347 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN3Q9H347 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN3Q9H347 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.99■□□□□ 0.95
UBQLN3Q9H347 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBQLN3Q9H347 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.98■□□□□ 0.95
UBQLN3Q9H347 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
UBQLN3Q9H347 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBQLN3Q9H347 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
UBQLN3Q9H347 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
UBQLN3Q9H347 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
UBQLN3Q9H347 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBQLN3Q9H347 AC004448.1-201ENST00000458332 883 ntBASIC20.98■□□□□ 0.95
UBQLN3Q9H347 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.98■□□□□ 0.95
UBQLN3Q9H347 MIR6724-1-201ENST00000616420 92 ntBASIC20.98■□□□□ 0.95
UBQLN3Q9H347 MIR6724-2-201ENST00000616483 92 ntBASIC20.98■□□□□ 0.95
UBQLN3Q9H347 MIR6722-201ENST00000617286 78 ntBASIC20.98■□□□□ 0.95
UBQLN3Q9H347 MIR6724-4-201ENST00000617390 92 ntBASIC20.98■□□□□ 0.95
UBQLN3Q9H347 MIR6724-3-201ENST00000622482 92 ntBASIC20.98■□□□□ 0.95
UBQLN3Q9H347 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.98■□□□□ 0.95
UBQLN3Q9H347 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
UBQLN3Q9H347 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
UBQLN3Q9H347 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.97■□□□□ 0.95
UBQLN3Q9H347 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.97■□□□□ 0.95
UBQLN3Q9H347 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.97■□□□□ 0.95
UBQLN3Q9H347 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.97■□□□□ 0.95
UBQLN3Q9H347 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.97■□□□□ 0.95
UBQLN3Q9H347 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.97■□□□□ 0.95
UBQLN3Q9H347 AC131274.2-201ENST00000580697 1507 ntBASIC20.96■□□□□ 0.95
UBQLN3Q9H347 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.96■□□□□ 0.95
UBQLN3Q9H347 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.96■□□□□ 0.95
UBQLN3Q9H347 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
UBQLN3Q9H347 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN3Q9H347 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN3Q9H347 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN3Q9H347 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.95■□□□□ 0.94
UBQLN3Q9H347 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN3Q9H347 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN3Q9H347 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.95■□□□□ 0.94
UBQLN3Q9H347 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.95■□□□□ 0.94
UBQLN3Q9H347 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.95■□□□□ 0.94
UBQLN3Q9H347 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN3Q9H347 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN3Q9H347 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN3Q9H347 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBQLN3Q9H347 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
UBQLN3Q9H347 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
UBQLN3Q9H347 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
UBQLN3Q9H347 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.94■□□□□ 0.94
UBQLN3Q9H347 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBQLN3Q9H347 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
UBQLN3Q9H347 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 AL117332.1-201ENST00000622628 974 ntBASIC20.93■□□□□ 0.94
UBQLN3Q9H347 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBQLN3Q9H347 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBQLN3Q9H347 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBQLN3Q9H347 MIR3621-201ENST00000580529 85 ntBASIC20.92■□□□□ 0.94
UBQLN3Q9H347 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
UBQLN3Q9H347 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
UBQLN3Q9H347 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.92■□□□□ 0.94
UBQLN3Q9H347 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
UBQLN3Q9H347 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
UBQLN3Q9H347 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.92■□□□□ 0.94
UBQLN3Q9H347 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
UBQLN3Q9H347 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
UBQLN3Q9H347 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
UBQLN3Q9H347 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.91■□□□□ 0.94
UBQLN3Q9H347 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
UBQLN3Q9H347 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.91■□□□□ 0.94
UBQLN3Q9H347 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
UBQLN3Q9H347 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
UBQLN3Q9H347 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
UBQLN3Q9H347 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
UBQLN3Q9H347 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.9■□□□□ 0.94
UBQLN3Q9H347 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
UBQLN3Q9H347 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
UBQLN3Q9H347 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UBQLN3Q9H347 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.9■□□□□ 0.94
UBQLN3Q9H347 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
UBQLN3Q9H347 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
UBQLN3Q9H347 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UBQLN3Q9H347 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
UBQLN3Q9H347 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
UBQLN3Q9H347 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
UBQLN3Q9H347 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
UBQLN3Q9H347 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.94
UBQLN3Q9H347 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.89■□□□□ 0.94
UBQLN3Q9H347 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms