Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.35■■□□□ 1.01
PTCHD1Q96NR3 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.35■■□□□ 1.01
PTCHD1Q96NR3 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD1Q96NR3 AC131281.2-201ENST00000520478 145 ntBASIC21.35■■□□□ 1.01
PTCHD1Q96NR3 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD1Q96NR3 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
PTCHD1Q96NR3 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD1Q96NR3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD1Q96NR3 AC004812.2-201ENST00000611079 2094 ntBASIC21.35■■□□□ 1.01
PTCHD1Q96NR3 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD1Q96NR3 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.35■■□□□ 1.01
PTCHD1Q96NR3 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD1Q96NR3 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD1Q96NR3 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTCHD1Q96NR3 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTCHD1Q96NR3 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.33■■□□□ 1.01
PTCHD1Q96NR3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
PTCHD1Q96NR3 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
PTCHD1Q96NR3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.33■■□□□ 1.01
PTCHD1Q96NR3 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.33■■□□□ 1
PTCHD1Q96NR3 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PTCHD1Q96NR3 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PTCHD1Q96NR3 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.33■■□□□ 1
PTCHD1Q96NR3 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PTCHD1Q96NR3 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
PTCHD1Q96NR3 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.32■■□□□ 1
PTCHD1Q96NR3 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.32■■□□□ 1
PTCHD1Q96NR3 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.32■■□□□ 1
PTCHD1Q96NR3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PTCHD1Q96NR3 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
PTCHD1Q96NR3 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
PTCHD1Q96NR3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.32■■□□□ 1
PTCHD1Q96NR3 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.32■■□□□ 1
PTCHD1Q96NR3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.32■■□□□ 1
PTCHD1Q96NR3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.32■■□□□ 1
PTCHD1Q96NR3 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.32■■□□□ 1
PTCHD1Q96NR3 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PTCHD1Q96NR3 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
PTCHD1Q96NR3 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
PTCHD1Q96NR3 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.31■■□□□ 1
PTCHD1Q96NR3 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
PTCHD1Q96NR3 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
PTCHD1Q96NR3 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
PTCHD1Q96NR3 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.31■■□□□ 1
PTCHD1Q96NR3 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.31■■□□□ 1
PTCHD1Q96NR3 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.31■■□□□ 1
PTCHD1Q96NR3 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.31■■□□□ 1
PTCHD1Q96NR3 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.31■■□□□ 1
PTCHD1Q96NR3 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PTCHD1Q96NR3 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PTCHD1Q96NR3 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PTCHD1Q96NR3 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PTCHD1Q96NR3 AL512631.2-201ENST00000604634 923 ntBASIC21.3■■□□□ 1
PTCHD1Q96NR3 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PTCHD1Q96NR3 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
PTCHD1Q96NR3 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.3■■□□□ 1
PTCHD1Q96NR3 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
PTCHD1Q96NR3 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.29■■□□□ 1
PTCHD1Q96NR3 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTCHD1Q96NR3 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
PTCHD1Q96NR3 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.29■■□□□ 1
PTCHD1Q96NR3 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
PTCHD1Q96NR3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTCHD1Q96NR3 AL136116.3-201ENST00000402907 1138 ntBASIC21.29■■□□□ 1
PTCHD1Q96NR3 MIR4466-201ENST00000606121 54 ntBASIC21.29■■□□□ 1
PTCHD1Q96NR3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.29■■□□□ 1
PTCHD1Q96NR3 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTCHD1Q96NR3 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
PTCHD1Q96NR3 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.29■■□□□ 1
PTCHD1Q96NR3 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
PTCHD1Q96NR3 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTCHD1Q96NR3 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTCHD1Q96NR3 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms