Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.73■■□□□ 1.07
CLIP3Q96DZ5 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CLIP3Q96DZ5 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLIP3Q96DZ5 AC138932.3-201ENST00000567634 1902 ntBASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CLIP3Q96DZ5 HLA-L-211ENST00000482052 1765 ntBASIC21.71■■□□□ 1.07
CLIP3Q96DZ5 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
CLIP3Q96DZ5 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLIP3Q96DZ5 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLIP3Q96DZ5 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CLIP3Q96DZ5 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLIP3Q96DZ5 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLIP3Q96DZ5 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLIP3Q96DZ5 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.71■■□□□ 1.07
CLIP3Q96DZ5 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
CLIP3Q96DZ5 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLIP3Q96DZ5 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
CLIP3Q96DZ5 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLIP3Q96DZ5 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CLIP3Q96DZ5 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CLIP3Q96DZ5 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.7■■□□□ 1.06
CLIP3Q96DZ5 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
CLIP3Q96DZ5 PBX2P1-201ENST00000493219 1291 ntBASIC21.7■■□□□ 1.06
CLIP3Q96DZ5 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
CLIP3Q96DZ5 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.7■■□□□ 1.06
CLIP3Q96DZ5 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLIP3Q96DZ5 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.7■■□□□ 1.06
CLIP3Q96DZ5 AC142381.3-201ENST00000568208 1670 ntBASIC21.69■■□□□ 1.06
CLIP3Q96DZ5 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
CLIP3Q96DZ5 UNC93B3-201ENST00000308076 687 ntBASIC21.69■■□□□ 1.06
CLIP3Q96DZ5 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.69■■□□□ 1.06
CLIP3Q96DZ5 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.69■■□□□ 1.06
CLIP3Q96DZ5 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.69■■□□□ 1.06
CLIP3Q96DZ5 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLIP3Q96DZ5 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CLIP3Q96DZ5 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.69■■□□□ 1.06
CLIP3Q96DZ5 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLIP3Q96DZ5 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CLIP3Q96DZ5 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLIP3Q96DZ5 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLIP3Q96DZ5 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLIP3Q96DZ5 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CLIP3Q96DZ5 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CLIP3Q96DZ5 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLIP3Q96DZ5 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CLIP3Q96DZ5 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.68■■□□□ 1.06
CLIP3Q96DZ5 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLIP3Q96DZ5 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
CLIP3Q96DZ5 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLIP3Q96DZ5 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
CLIP3Q96DZ5 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLIP3Q96DZ5 AC005837.3-201ENST00000612163 286 ntBASIC21.67■■□□□ 1.06
CLIP3Q96DZ5 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.67■■□□□ 1.06
CLIP3Q96DZ5 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLIP3Q96DZ5 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
CLIP3Q96DZ5 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLIP3Q96DZ5 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLIP3Q96DZ5 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.66■■□□□ 1.06
CLIP3Q96DZ5 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.66■■□□□ 1.06
CLIP3Q96DZ5 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLIP3Q96DZ5 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLIP3Q96DZ5 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.66■■□□□ 1.06
CLIP3Q96DZ5 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.66■■□□□ 1.06
CLIP3Q96DZ5 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLIP3Q96DZ5 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLIP3Q96DZ5 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLIP3Q96DZ5 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLIP3Q96DZ5 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.65■■□□□ 1.06
CLIP3Q96DZ5 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLIP3Q96DZ5 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.65■■□□□ 1.06
CLIP3Q96DZ5 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.65■■□□□ 1.06
CLIP3Q96DZ5 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.65■■□□□ 1.06
CLIP3Q96DZ5 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLIP3Q96DZ5 AL136162.1-201ENST00000607711 1078 ntBASIC21.65■■□□□ 1.06
CLIP3Q96DZ5 AC106739.1-201ENST00000617035 715 ntBASIC21.65■■□□□ 1.06
CLIP3Q96DZ5 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLIP3Q96DZ5 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.65■■□□□ 1.06
CLIP3Q96DZ5 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLIP3Q96DZ5 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.64■■□□□ 1.06
CLIP3Q96DZ5 AL161729.1-201ENST00000604104 1402 ntBASIC21.64■■□□□ 1.06
CLIP3Q96DZ5 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CLIP3Q96DZ5 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLIP3Q96DZ5 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CLIP3Q96DZ5 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CLIP3Q96DZ5 AC133561.4-201ENST00000566112 224 ntBASIC21.64■■□□□ 1.05
CLIP3Q96DZ5 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLIP3Q96DZ5 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CLIP3Q96DZ5 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CLIP3Q96DZ5 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms