Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USF3Q68DE3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USF3Q68DE3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.48■□□□□ 0.71
USF3Q68DE3 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USF3Q68DE3 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
USF3Q68DE3 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC19.47■□□□□ 0.71
USF3Q68DE3 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.47■□□□□ 0.71
USF3Q68DE3 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.47■□□□□ 0.71
USF3Q68DE3 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
USF3Q68DE3 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.47■□□□□ 0.71
USF3Q68DE3 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USF3Q68DE3 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USF3Q68DE3 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USF3Q68DE3 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
USF3Q68DE3 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
USF3Q68DE3 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USF3Q68DE3 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USF3Q68DE3 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USF3Q68DE3 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USF3Q68DE3 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USF3Q68DE3 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USF3Q68DE3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.46■□□□□ 0.71
USF3Q68DE3 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USF3Q68DE3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USF3Q68DE3 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.46■□□□□ 0.71
USF3Q68DE3 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USF3Q68DE3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USF3Q68DE3 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USF3Q68DE3 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USF3Q68DE3 AC091305.1-201ENST00000479476 895 ntBASIC19.45■□□□□ 0.7
USF3Q68DE3 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
USF3Q68DE3 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USF3Q68DE3 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USF3Q68DE3 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USF3Q68DE3 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USF3Q68DE3 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.45■□□□□ 0.7
USF3Q68DE3 MIR4767-201ENST00000582827 78 ntBASIC19.45■□□□□ 0.7
USF3Q68DE3 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USF3Q68DE3 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USF3Q68DE3 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USF3Q68DE3 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USF3Q68DE3 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USF3Q68DE3 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USF3Q68DE3 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
USF3Q68DE3 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USF3Q68DE3 AL162430.1-201ENST00000480705 870 ntBASIC19.44■□□□□ 0.7
USF3Q68DE3 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.44■□□□□ 0.7
USF3Q68DE3 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.44■□□□□ 0.7
USF3Q68DE3 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.44■□□□□ 0.7
USF3Q68DE3 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.44■□□□□ 0.7
USF3Q68DE3 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USF3Q68DE3 AC142381.3-201ENST00000568208 1670 ntBASIC19.43■□□□□ 0.7
USF3Q68DE3 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USF3Q68DE3 AC097381.1-201ENST00000429019 1296 ntBASIC19.43■□□□□ 0.7
USF3Q68DE3 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USF3Q68DE3 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19.43■□□□□ 0.7
USF3Q68DE3 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USF3Q68DE3 AC099791.2-201ENST00000605725 427 ntBASIC19.43■□□□□ 0.7
USF3Q68DE3 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USF3Q68DE3 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USF3Q68DE3 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
USF3Q68DE3 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USF3Q68DE3 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USF3Q68DE3 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USF3Q68DE3 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.42■□□□□ 0.7
USF3Q68DE3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.42■□□□□ 0.7
USF3Q68DE3 C17orf82-201ENST00000623772 1530 ntBASIC19.42■□□□□ 0.7
USF3Q68DE3 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
USF3Q68DE3 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
USF3Q68DE3 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.42■□□□□ 0.7
USF3Q68DE3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.42■□□□□ 0.7
USF3Q68DE3 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USF3Q68DE3 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USF3Q68DE3 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USF3Q68DE3 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USF3Q68DE3 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USF3Q68DE3 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.42■□□□□ 0.7
USF3Q68DE3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USF3Q68DE3 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.41■□□□□ 0.7
USF3Q68DE3 AC011298.3-201ENST00000615796 283 ntBASIC19.41■□□□□ 0.7
USF3Q68DE3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USF3Q68DE3 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USF3Q68DE3 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
USF3Q68DE3 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USF3Q68DE3 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USF3Q68DE3 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USF3Q68DE3 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USF3Q68DE3 MIR6821-201ENST00000617625 74 ntBASIC19.41■□□□□ 0.7
USF3Q68DE3 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.41■□□□□ 0.7
USF3Q68DE3 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.41■□□□□ 0.7
USF3Q68DE3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USF3Q68DE3 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.4■□□□□ 0.7
USF3Q68DE3 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USF3Q68DE3 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
USF3Q68DE3 CA15P2-201ENST00000611168 834 ntBASIC19.4■□□□□ 0.7
USF3Q68DE3 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USF3Q68DE3 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USF3Q68DE3 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USF3Q68DE3 AC008764.7-201ENST00000593779 1081 ntBASIC19.39■□□□□ 0.69
USF3Q68DE3 AL138724.1-201ENST00000606771 1088 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms