Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 AC004448.1-201ENST00000458332 883 ntBASIC18.18■□□□□ 0.5
CX3CL1P78423 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.18■□□□□ 0.5
CX3CL1P78423 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CX3CL1P78423 KRT125P-201ENST00000546827 989 ntBASIC18.18■□□□□ 0.5
CX3CL1P78423 Z92544.1-202ENST00000571933 1220 ntBASIC18.18■□□□□ 0.5
CX3CL1P78423 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.18■□□□□ 0.5
CX3CL1P78423 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.18■□□□□ 0.5
CX3CL1P78423 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CX3CL1P78423 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CX3CL1P78423 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CX3CL1P78423 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CX3CL1P78423 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.18■□□□□ 0.5
CX3CL1P78423 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CX3CL1P78423 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CX3CL1P78423 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CX3CL1P78423 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CX3CL1P78423 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.17■□□□□ 0.5
CX3CL1P78423 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.17■□□□□ 0.5
CX3CL1P78423 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.17■□□□□ 0.5
CX3CL1P78423 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CX3CL1P78423 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CX3CL1P78423 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CX3CL1P78423 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.16■□□□□ 0.5
CX3CL1P78423 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CX3CL1P78423 AC239859.2-201ENST00000444165 318 ntBASIC18.16■□□□□ 0.5
CX3CL1P78423 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CX3CL1P78423 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CX3CL1P78423 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CX3CL1P78423 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CX3CL1P78423 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.16■□□□□ 0.5
CX3CL1P78423 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.15■□□□□ 0.5
CX3CL1P78423 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CX3CL1P78423 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CX3CL1P78423 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CX3CL1P78423 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CX3CL1P78423 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CX3CL1P78423 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CX3CL1P78423 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CX3CL1P78423 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CX3CL1P78423 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CX3CL1P78423 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CX3CL1P78423 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CX3CL1P78423 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CX3CL1P78423 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CX3CL1P78423 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CX3CL1P78423 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC18.14■□□□□ 0.49
CX3CL1P78423 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.14■□□□□ 0.49
CX3CL1P78423 SNX5-217ENST00000606557 1087 ntBASIC18.14■□□□□ 0.49
CX3CL1P78423 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CX3CL1P78423 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CX3CL1P78423 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CX3CL1P78423 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CX3CL1P78423 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CX3CL1P78423 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CX3CL1P78423 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CX3CL1P78423 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.14■□□□□ 0.49
CX3CL1P78423 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CX3CL1P78423 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CX3CL1P78423 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CX3CL1P78423 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CX3CL1P78423 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CX3CL1P78423 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CX3CL1P78423 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CX3CL1P78423 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.13■□□□□ 0.49
CX3CL1P78423 MIR4787-201ENST00000607364 84 ntBASIC18.13■□□□□ 0.49
CX3CL1P78423 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.13■□□□□ 0.49
CX3CL1P78423 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CX3CL1P78423 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CX3CL1P78423 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CX3CL1P78423 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CX3CL1P78423 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CX3CL1P78423 ALDH1A3-203ENST00000557963 1670 ntBASIC18.12■□□□□ 0.49
CX3CL1P78423 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CX3CL1P78423 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CX3CL1P78423 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CX3CL1P78423 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CX3CL1P78423 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CX3CL1P78423 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CX3CL1P78423 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.12■□□□□ 0.49
CX3CL1P78423 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.12■□□□□ 0.49
CX3CL1P78423 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.12■□□□□ 0.49
CX3CL1P78423 AC092028.1-203ENST00000608262 953 ntBASIC18.12■□□□□ 0.49
CX3CL1P78423 AL035685.1-201ENST00000636663 812 ntBASIC18.12■□□□□ 0.49
CX3CL1P78423 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.12■□□□□ 0.49
CX3CL1P78423 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CX3CL1P78423 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.12■□□□□ 0.49
CX3CL1P78423 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.12■□□□□ 0.49
CX3CL1P78423 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.12■□□□□ 0.49
CX3CL1P78423 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CX3CL1P78423 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CX3CL1P78423 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CX3CL1P78423 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CX3CL1P78423 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CX3CL1P78423 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CX3CL1P78423 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CX3CL1P78423 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CX3CL1P78423 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC18.11■□□□□ 0.49
CX3CL1P78423 CLTA-210ENST00000540080 989 ntTSL 2 BASIC18.11■□□□□ 0.49
CX3CL1P78423 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CX3CL1P78423 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms