Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM4P50479 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM4P50479 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.2■□□□□ 0.66
PDLIM4P50479 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
PDLIM4P50479 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM4P50479 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.2■□□□□ 0.66
PDLIM4P50479 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM4P50479 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM4P50479 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM4P50479 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM4P50479 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
PDLIM4P50479 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM4P50479 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
PDLIM4P50479 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.19■□□□□ 0.66
PDLIM4P50479 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM4P50479 AC012676.1-201ENST00000574705 1949 ntBASIC19.19■□□□□ 0.66
PDLIM4P50479 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
PDLIM4P50479 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM4P50479 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM4P50479 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM4P50479 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM4P50479 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
PDLIM4P50479 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PDLIM4P50479 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PDLIM4P50479 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM4P50479 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM4P50479 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM4P50479 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM4P50479 AC133561.1-201ENST00000568600 2415 ntBASIC19.18■□□□□ 0.66
PDLIM4P50479 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM4P50479 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM4P50479 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM4P50479 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM4P50479 AF213884.3-201ENST00000563833 479 ntBASIC19.18■□□□□ 0.66
PDLIM4P50479 AC099791.2-201ENST00000605725 427 ntBASIC19.18■□□□□ 0.66
PDLIM4P50479 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.18■□□□□ 0.66
PDLIM4P50479 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM4P50479 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM4P50479 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM4P50479 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM4P50479 AL161729.1-201ENST00000604104 1402 ntBASIC19.17■□□□□ 0.66
PDLIM4P50479 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM4P50479 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM4P50479 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
PDLIM4P50479 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PDLIM4P50479 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
PDLIM4P50479 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.17■□□□□ 0.66
PDLIM4P50479 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.17■□□□□ 0.66
PDLIM4P50479 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM4P50479 AC009102.2-201ENST00000606772 1639 ntBASIC19.17■□□□□ 0.66
PDLIM4P50479 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM4P50479 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM4P50479 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM4P50479 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM4P50479 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PDLIM4P50479 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM4P50479 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM4P50479 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM4P50479 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.16■□□□□ 0.66
PDLIM4P50479 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.16■□□□□ 0.66
PDLIM4P50479 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.16■□□□□ 0.66
PDLIM4P50479 AL138724.1-201ENST00000606771 1088 ntBASIC19.16■□□□□ 0.66
PDLIM4P50479 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM4P50479 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM4P50479 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM4P50479 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM4P50479 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM4P50479 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM4P50479 SERBP1P1-201ENST00000396021 1160 ntBASIC19.15■□□□□ 0.66
PDLIM4P50479 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM4P50479 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.15■□□□□ 0.66
PDLIM4P50479 AC105265.2-201ENST00000467189 838 ntBASIC19.15■□□□□ 0.66
PDLIM4P50479 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.15■□□□□ 0.66
PDLIM4P50479 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.15■□□□□ 0.66
PDLIM4P50479 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.15■□□□□ 0.66
PDLIM4P50479 RARRES2P6-201ENST00000567333 442 ntBASIC19.15■□□□□ 0.66
PDLIM4P50479 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.15■□□□□ 0.66
PDLIM4P50479 MIR4767-201ENST00000582827 78 ntBASIC19.15■□□□□ 0.66
PDLIM4P50479 AL136967.2-201ENST00000623968 743 ntBASIC19.15■□□□□ 0.66
PDLIM4P50479 AC241377.3-202ENST00000626088 1088 ntBASIC19.15■□□□□ 0.66
PDLIM4P50479 AC241585.3-202ENST00000628937 1088 ntBASIC19.15■□□□□ 0.66
PDLIM4P50479 AC245100.8-202ENST00000629247 1058 ntBASIC19.15■□□□□ 0.66
PDLIM4P50479 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.15■□□□□ 0.66
PDLIM4P50479 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.15■□□□□ 0.66
PDLIM4P50479 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PDLIM4P50479 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
PDLIM4P50479 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
PDLIM4P50479 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PDLIM4P50479 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.14■□□□□ 0.65
PDLIM4P50479 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PDLIM4P50479 AC091305.1-201ENST00000479476 895 ntBASIC19.14■□□□□ 0.65
PDLIM4P50479 AP001330.3-201ENST00000520123 633 ntBASIC19.14■□□□□ 0.65
PDLIM4P50479 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.14■□□□□ 0.65
PDLIM4P50479 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
PDLIM4P50479 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
PDLIM4P50479 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PDLIM4P50479 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.13■□□□□ 0.65
PDLIM4P50479 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDLIM4P50479 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDLIM4P50479 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms