Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 YMR051CYMR051C 1323 nt5.09□□□□□ -1.59
UPF3P48412 YNL054W-AYNL054W-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YOL103W-AYOL103W-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YPL257W-AYPL257W-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YPR137C-AYPR137C-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YPR158C-CYPR158C-C 1323 nt5.09□□□□□ -1.59
UPF3P48412 ARD1YHR013C 717 nt5.09□□□□□ -1.59
UPF3P48412 TIS11YLR136C 858 nt5.09□□□□□ -1.59
UPF3P48412 GSP2YOR185C 663 nt5.09□□□□□ -1.59
UPF3P48412 YPL114WYPL114W 420 nt5.09□□□□□ -1.59
UPF3P48412 SEC9YGR009C 1956 nt5.09□□□□□ -1.6
UPF3P48412 FRE3YOR381W 2136 nt5.08□□□□□ -1.6
UPF3P48412 ATG20YDL113C 1923 nt5.08□□□□□ -1.6
UPF3P48412 MRF1YGL143C 1242 nt5.08□□□□□ -1.6
UPF3P48412 SCW4YGR279C 1161 nt5.08□□□□□ -1.6
UPF3P48412 SFT2YBL102W 648 nt5.08□□□□□ -1.6
UPF3P48412 ARG1YOL058W 1263 nt5.08□□□□□ -1.6
UPF3P48412 YOR008W-BYOR008W-B 102 nt5.08□□□□□ -1.6
UPF3P48412 CBC2YPL178W 627 nt5.08□□□□□ -1.6
UPF3P48412 BIT2YBR270C 1638 nt5.08□□□□□ -1.6
UPF3P48412 LEU1YGL009C 2340 nt5.07□□□□□ -1.6
UPF3P48412 FRS1YLR060W 1788 nt5.07□□□□□ -1.6
UPF3P48412 PRR2YDL214C 2100 nt5.07□□□□□ -1.6
UPF3P48412 PHO92YDR374C 921 nt5.07□□□□□ -1.6
UPF3P48412 XPT1YJR133W 630 nt5.07□□□□□ -1.6
UPF3P48412 YKL071WYKL071W 771 nt5.07□□□□□ -1.6
UPF3P48412 VPS28YPL065W 729 nt5.07□□□□□ -1.6
UPF3P48412 FES1YBR101C 873 nt5.07□□□□□ -1.6
UPF3P48412 YHL012WYHL012W 1482 nt5.07□□□□□ -1.6
UPF3P48412 UTP6YDR449C 1323 nt5.06□□□□□ -1.6
UPF3P48412 TGL1YKL140W 1647 nt5.06□□□□□ -1.6
UPF3P48412 PUS1YPL212C 1635 nt5.06□□□□□ -1.6
UPF3P48412 KNH1YDL049C 807 nt5.06□□□□□ -1.6
UPF3P48412 YHR127WYHR127W 732 nt5.06□□□□□ -1.6
UPF3P48412 YBR134WYBR134W 402 nt5.06□□□□□ -1.6
UPF3P48412 SKM1YOL113W 1968 nt5.05□□□□□ -1.6
UPF3P48412 TYW1YPL207W 2433 nt5.05□□□□□ -1.6
UPF3P48412 POL12YBL035C 2118 nt5.05□□□□□ -1.6
UPF3P48412 YHR182WYHR182W 2358 nt5.05□□□□□ -1.6
UPF3P48412 YPK3YBR028C 1578 nt5.05□□□□□ -1.6
UPF3P48412 GAL4YPL248C 2646 nt5.05□□□□□ -1.6
UPF3P48412 YGR015CYGR015C 987 nt5.05□□□□□ -1.6
UPF3P48412 SNL1YIL016W 480 nt5.05□□□□□ -1.6
UPF3P48412 YLR326WYLR326W 723 nt5.05□□□□□ -1.6
UPF3P48412 HRT1YOL133W 366 nt5.05□□□□□ -1.6
UPF3P48412 ATG14YBR128C 1035 nt5.05□□□□□ -1.6
UPF3P48412 FUM1YPL262W 1467 nt5.05□□□□□ -1.6
UPF3P48412 RKM2YDR198C 1440 nt5.05□□□□□ -1.6
UPF3P48412 CDC9YDL164C 2268 nt5.04□□□□□ -1.6
UPF3P48412 HES1YOR237W 1305 nt5.04□□□□□ -1.6
UPF3P48412 SPR28YDR218C 1272 nt5.04□□□□□ -1.6
UPF3P48412 MCM21YDR318W 1107 nt5.04□□□□□ -1.6
UPF3P48412 YGL101WYGL101W 648 nt5.04□□□□□ -1.6
UPF3P48412 YPT32YGL210W 669 nt5.04□□□□□ -1.6
UPF3P48412 EDC1YGL222C 528 nt5.04□□□□□ -1.6
UPF3P48412 TDH3YGR192C 999 nt5.04□□□□□ -1.6
UPF3P48412 YIL163CYIL163C 354 nt5.04□□□□□ -1.6
UPF3P48412 YLR125WYLR125W 411 nt5.04□□□□□ -1.6
UPF3P48412 SPG4YMR107W 348 nt5.04□□□□□ -1.6
UPF3P48412 YIM2YMR151W 438 nt5.04□□□□□ -1.6
UPF3P48412 YBL077WYBL077W 432 nt5.04□□□□□ -1.6
UPF3P48412 MRM1YOR201C 1239 nt5.04□□□□□ -1.6
UPF3P48412 PEX19YDL065C 1029 nt5.03□□□□□ -1.6
UPF3P48412 AIR2YDL175C 1035 nt5.03□□□□□ -1.6
UPF3P48412 COS7YDL248W 1152 nt5.03□□□□□ -1.6
UPF3P48412 CAB1YDR531W 1104 nt5.03□□□□□ -1.6
UPF3P48412 UTR4YEL038W 684 nt5.03□□□□□ -1.6
UPF3P48412 ACT1YFL039C 1128 nt5.03□□□□□ -1.6
UPF3P48412 YLF2YHL014C 1218 nt5.03□□□□□ -1.6
UPF3P48412 COS5YJR161C 1152 nt5.03□□□□□ -1.6
UPF3P48412 REX3YLR107W 1215 nt5.03□□□□□ -1.6
UPF3P48412 YLR118CYLR118C 684 nt5.03□□□□□ -1.6
UPF3P48412 PPG1YNR032W 1107 nt5.03□□□□□ -1.6
UPF3P48412 MPD1YOR288C 957 nt5.03□□□□□ -1.6
UPF3P48412 COX11YPL132W 903 nt5.03□□□□□ -1.6
UPF3P48412 NGR1YBR212W 2019 nt5.02□□□□□ -1.61
UPF3P48412 CUS1YMR240C 1311 nt5.02□□□□□ -1.61
UPF3P48412 MCM2YBL023C 2607 nt5.02□□□□□ -1.61
UPF3P48412 STB2YMR053C 2553 nt5.02□□□□□ -1.61
UPF3P48412 YJL068CYJL068C 900 nt5.02□□□□□ -1.61
UPF3P48412 YMR114CYMR114C 1107 nt5.02□□□□□ -1.61
UPF3P48412 ISU2YOR226C 471 nt5.02□□□□□ -1.61
UPF3P48412 CTS1YLR286C 1689 nt5.02□□□□□ -1.61
UPF3P48412 MMP1YLL061W 1752 nt5.01□□□□□ -1.61
UPF3P48412 CUE2YKL090W 1332 nt5.01□□□□□ -1.61
UPF3P48412 PAF1YBR279W 1338 nt5.01□□□□□ -1.61
UPF3P48412 IKS1YJL057C 2004 nt5.01□□□□□ -1.61
UPF3P48412 TIM54YJL054W 1437 nt5.01□□□□□ -1.61
UPF3P48412 BUD30YDL151C 582 nt5.01□□□□□ -1.61
UPF3P48412 ERD1YDR414C 1089 nt5.01□□□□□ -1.61
UPF3P48412 RPL21BYPL079W 483 nt5.01□□□□□ -1.61
UPF3P48412 ALG2YGL065C 1512 nt5.01□□□□□ -1.61
UPF3P48412 TDA11YHR159W 1515 nt5.01□□□□□ -1.61
UPF3P48412 SYP1YCR030C 2613 nt5.01□□□□□ -1.61
UPF3P48412 PHO8YDR481C 1701 nt5□□□□□ -1.61
UPF3P48412 ZUO1YGR285C 1302 nt5□□□□□ -1.61
UPF3P48412 ADE6YGR061C 4077 nt5□□□□□ -1.61
UPF3P48412 YMR1YJR110W 2067 nt5□□□□□ -1.61
UPF3P48412 TOS3YGL179C 1683 nt5□□□□□ -1.61
UPF3P48412 MLC1YGL106W 450 nt5□□□□□ -1.61
Retrieved 100 of 7,029 protein–RNA pairs in 59.5 ms