Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC19.92■□□□□ 0.78
COL8A1P27658 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL8A1P27658 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL8A1P27658 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL8A1P27658 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
COL8A1P27658 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL8A1P27658 RAP2CP1-201ENST00000605103 478 ntBASIC19.91■□□□□ 0.78
COL8A1P27658 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.91■□□□□ 0.78
COL8A1P27658 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL8A1P27658 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL8A1P27658 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.9■□□□□ 0.78
COL8A1P27658 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.9■□□□□ 0.78
COL8A1P27658 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL8A1P27658 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
COL8A1P27658 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL8A1P27658 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.89■□□□□ 0.77
COL8A1P27658 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.89■□□□□ 0.77
COL8A1P27658 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.89■□□□□ 0.77
COL8A1P27658 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.89■□□□□ 0.77
COL8A1P27658 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.89■□□□□ 0.77
COL8A1P27658 AC073111.5-205ENST00000641717 521 ntBASIC19.89■□□□□ 0.77
COL8A1P27658 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL8A1P27658 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL8A1P27658 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL8A1P27658 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.88■□□□□ 0.77
COL8A1P27658 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL8A1P27658 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
COL8A1P27658 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL8A1P27658 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.88■□□□□ 0.77
COL8A1P27658 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL8A1P27658 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.88■□□□□ 0.77
COL8A1P27658 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.88■□□□□ 0.77
COL8A1P27658 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.88■□□□□ 0.77
COL8A1P27658 TERF1P2-201ENST00000583350 1212 ntBASIC19.88■□□□□ 0.77
COL8A1P27658 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL8A1P27658 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.88■□□□□ 0.77
COL8A1P27658 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL8A1P27658 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
COL8A1P27658 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL8A1P27658 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.87■□□□□ 0.77
COL8A1P27658 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.87■□□□□ 0.77
COL8A1P27658 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL8A1P27658 MIR572-201ENST00000384983 95 ntBASIC19.87■□□□□ 0.77
COL8A1P27658 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.87■□□□□ 0.77
COL8A1P27658 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.87■□□□□ 0.77
COL8A1P27658 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.87■□□□□ 0.77
COL8A1P27658 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.87■□□□□ 0.77
COL8A1P27658 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL8A1P27658 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL8A1P27658 TSPY20P-201ENST00000450910 630 ntBASIC19.86■□□□□ 0.77
COL8A1P27658 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.86■□□□□ 0.77
COL8A1P27658 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.86■□□□□ 0.77
COL8A1P27658 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
COL8A1P27658 AL109923.1-201ENST00000618799 583 ntBASIC19.86■□□□□ 0.77
COL8A1P27658 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.85■□□□□ 0.77
COL8A1P27658 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL8A1P27658 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
COL8A1P27658 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.85■□□□□ 0.77
COL8A1P27658 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL8A1P27658 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
COL8A1P27658 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.85■□□□□ 0.77
COL8A1P27658 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.85■□□□□ 0.77
COL8A1P27658 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL8A1P27658 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.85■□□□□ 0.77
COL8A1P27658 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.85■□□□□ 0.77
COL8A1P27658 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.85■□□□□ 0.77
COL8A1P27658 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.85■□□□□ 0.77
COL8A1P27658 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL8A1P27658 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL8A1P27658 AL354811.1-201ENST00000610286 706 ntBASIC19.85■□□□□ 0.77
COL8A1P27658 pRNA.6-201ENST00000610482 90 ntBASIC19.85■□□□□ 0.77
COL8A1P27658 pRNA.5-201ENST00000612139 90 ntBASIC19.85■□□□□ 0.77
COL8A1P27658 pRNA.11-201ENST00000618423 90 ntBASIC19.85■□□□□ 0.77
COL8A1P27658 pRNA.13-201ENST00000619112 90 ntBASIC19.85■□□□□ 0.77
COL8A1P27658 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL8A1P27658 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL8A1P27658 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL8A1P27658 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL8A1P27658 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL8A1P27658 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
COL8A1P27658 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL8A1P27658 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.84■□□□□ 0.77
COL8A1P27658 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.84■□□□□ 0.77
COL8A1P27658 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.84■□□□□ 0.77
COL8A1P27658 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL8A1P27658 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL8A1P27658 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL8A1P27658 LINC02228-203ENST00000641970 1355 ntBASIC19.83■□□□□ 0.77
COL8A1P27658 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL8A1P27658 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL8A1P27658 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL8A1P27658 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL8A1P27658 AC131274.2-201ENST00000580697 1507 ntBASIC19.83■□□□□ 0.77
COL8A1P27658 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL8A1P27658 AC016769.1-201ENST00000409132 1010 ntBASIC19.83■□□□□ 0.77
COL8A1P27658 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.83■□□□□ 0.77
COL8A1P27658 AC026185.1-201ENST00000445748 174 ntBASIC19.83■□□□□ 0.77
COL8A1P27658 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL8A1P27658 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL8A1P27658 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms