Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MT-ND4P03905 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MT-ND4P03905 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
MT-ND4P03905 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
MT-ND4P03905 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MT-ND4P03905 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC19.66■□□□□ 0.74
MT-ND4P03905 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MT-ND4P03905 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
MT-ND4P03905 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MT-ND4P03905 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
MT-ND4P03905 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MT-ND4P03905 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MT-ND4P03905 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.65■□□□□ 0.74
MT-ND4P03905 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.65■□□□□ 0.74
MT-ND4P03905 AC133552.2-201ENST00000619106 1032 ntBASIC19.65■□□□□ 0.74
MT-ND4P03905 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
MT-ND4P03905 AC009831.1-201ENST00000580420 1582 ntBASIC19.65■□□□□ 0.74
MT-ND4P03905 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MT-ND4P03905 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
MT-ND4P03905 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
MT-ND4P03905 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
MT-ND4P03905 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
MT-ND4P03905 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MT-ND4P03905 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MT-ND4P03905 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MT-ND4P03905 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MT-ND4P03905 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MT-ND4P03905 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MT-ND4P03905 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MT-ND4P03905 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.64■□□□□ 0.73
MT-ND4P03905 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
MT-ND4P03905 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MT-ND4P03905 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
MT-ND4P03905 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MT-ND4P03905 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MT-ND4P03905 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MT-ND4P03905 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MT-ND4P03905 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.63■□□□□ 0.73
MT-ND4P03905 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MT-ND4P03905 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.63■□□□□ 0.73
MT-ND4P03905 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
MT-ND4P03905 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MT-ND4P03905 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.63■□□□□ 0.73
MT-ND4P03905 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.63■□□□□ 0.73
MT-ND4P03905 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
MT-ND4P03905 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
MT-ND4P03905 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MT-ND4P03905 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
MT-ND4P03905 ECEL1P1-201ENST00000373592 1742 ntBASIC19.62■□□□□ 0.73
MT-ND4P03905 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MT-ND4P03905 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.62■□□□□ 0.73
MT-ND4P03905 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.62■□□□□ 0.73
MT-ND4P03905 DUSP8P3-201ENST00000399571 1760 ntBASIC19.62■□□□□ 0.73
MT-ND4P03905 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MT-ND4P03905 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
MT-ND4P03905 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MT-ND4P03905 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
MT-ND4P03905 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
MT-ND4P03905 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MT-ND4P03905 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MT-ND4P03905 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MT-ND4P03905 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
MT-ND4P03905 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MT-ND4P03905 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MT-ND4P03905 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.61■□□□□ 0.73
MT-ND4P03905 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MT-ND4P03905 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.61■□□□□ 0.73
MT-ND4P03905 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.6■□□□□ 0.73
MT-ND4P03905 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
MT-ND4P03905 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MT-ND4P03905 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
MT-ND4P03905 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.6■□□□□ 0.73
MT-ND4P03905 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.6■□□□□ 0.73
MT-ND4P03905 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MT-ND4P03905 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
MT-ND4P03905 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MT-ND4P03905 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MT-ND4P03905 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MT-ND4P03905 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.59■□□□□ 0.73
MT-ND4P03905 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
MT-ND4P03905 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MT-ND4P03905 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MT-ND4P03905 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MT-ND4P03905 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MT-ND4P03905 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.59■□□□□ 0.73
MT-ND4P03905 FOXO3B-201ENST00000395675 1928 ntBASIC19.59■□□□□ 0.73
MT-ND4P03905 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
MT-ND4P03905 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
MT-ND4P03905 AL137060.1-201ENST00000618151 2648 ntBASIC19.58■□□□□ 0.73
MT-ND4P03905 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
MT-ND4P03905 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
MT-ND4P03905 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC19.58■□□□□ 0.72
MT-ND4P03905 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.58■□□□□ 0.72
MT-ND4P03905 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MT-ND4P03905 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MT-ND4P03905 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
MT-ND4P03905 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MT-ND4P03905 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
MT-ND4P03905 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MT-ND4P03905 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms