Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SPTA1P02549 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SPTA1P02549 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SPTA1P02549 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SPTA1P02549 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SPTA1P02549 CDCA4P2-201ENST00000441182 718 ntBASIC20.72■□□□□ 0.91
SPTA1P02549 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SPTA1P02549 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.72■□□□□ 0.91
SPTA1P02549 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.72■□□□□ 0.91
SPTA1P02549 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SPTA1P02549 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SPTA1P02549 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SPTA1P02549 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SPTA1P02549 IGHV3-19-201ENST00000521488 291 ntBASIC20.71■□□□□ 0.91
SPTA1P02549 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SPTA1P02549 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SPTA1P02549 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SPTA1P02549 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SPTA1P02549 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.71■□□□□ 0.91
SPTA1P02549 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.71■□□□□ 0.91
SPTA1P02549 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
SPTA1P02549 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.7■□□□□ 0.91
SPTA1P02549 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.7■□□□□ 0.91
SPTA1P02549 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SPTA1P02549 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.7■□□□□ 0.9
SPTA1P02549 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.7■□□□□ 0.9
SPTA1P02549 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SPTA1P02549 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SPTA1P02549 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.69■□□□□ 0.9
SPTA1P02549 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SPTA1P02549 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.69■□□□□ 0.9
SPTA1P02549 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
SPTA1P02549 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.69■□□□□ 0.9
SPTA1P02549 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.69■□□□□ 0.9
SPTA1P02549 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SPTA1P02549 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
SPTA1P02549 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SPTA1P02549 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SPTA1P02549 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.69■□□□□ 0.9
SPTA1P02549 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.69■□□□□ 0.9
SPTA1P02549 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SPTA1P02549 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SPTA1P02549 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.68■□□□□ 0.9
SPTA1P02549 AC016769.1-201ENST00000409132 1010 ntBASIC20.68■□□□□ 0.9
SPTA1P02549 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.68■□□□□ 0.9
SPTA1P02549 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.68■□□□□ 0.9
SPTA1P02549 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.68■□□□□ 0.9
SPTA1P02549 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.68■□□□□ 0.9
SPTA1P02549 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SPTA1P02549 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SPTA1P02549 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SPTA1P02549 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SPTA1P02549 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SPTA1P02549 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SPTA1P02549 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
SPTA1P02549 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SPTA1P02549 AL354811.1-201ENST00000610286 706 ntBASIC20.68■□□□□ 0.9
SPTA1P02549 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SPTA1P02549 MIR6084-201ENST00000622012 110 ntBASIC20.68■□□□□ 0.9
SPTA1P02549 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.68■□□□□ 0.9
SPTA1P02549 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SPTA1P02549 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SPTA1P02549 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SPTA1P02549 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SPTA1P02549 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SPTA1P02549 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SPTA1P02549 AC006015.1-201ENST00000429970 570 ntBASIC20.67■□□□□ 0.9
SPTA1P02549 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SPTA1P02549 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SPTA1P02549 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SPTA1P02549 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SPTA1P02549 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SPTA1P02549 AC026185.1-201ENST00000445748 174 ntBASIC20.66■□□□□ 0.9
SPTA1P02549 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SPTA1P02549 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SPTA1P02549 AC080038.1-201ENST00000611274 1154 ntBASIC20.66■□□□□ 0.9
SPTA1P02549 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.66■□□□□ 0.9
SPTA1P02549 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SPTA1P02549 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SPTA1P02549 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
SPTA1P02549 AC104771.1-201ENST00000603335 964 ntBASIC20.66■□□□□ 0.9
SPTA1P02549 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SPTA1P02549 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SPTA1P02549 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.66■□□□□ 0.9
SPTA1P02549 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SPTA1P02549 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.65■□□□□ 0.9
SPTA1P02549 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.65■□□□□ 0.9
SPTA1P02549 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SPTA1P02549 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SPTA1P02549 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SPTA1P02549 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SPTA1P02549 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SPTA1P02549 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.65■□□□□ 0.9
SPTA1P02549 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.65■□□□□ 0.9
SPTA1P02549 TSPY20P-201ENST00000450910 630 ntBASIC20.65■□□□□ 0.9
SPTA1P02549 AC142086.2-201ENST00000569753 217 ntBASIC20.65■□□□□ 0.9
SPTA1P02549 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SPTA1P02549 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SPTA1P02549 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.65■□□□□ 0.9
SPTA1P02549 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms