Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-1A0A0B4J248 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.77■□□□□ 0.44
TRAV1-1A0A0B4J248 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC17.77■□□□□ 0.44
TRAV1-1A0A0B4J248 FBXW4P1-201ENST00000426721 2239 ntBASIC17.77■□□□□ 0.44
TRAV1-1A0A0B4J248 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-1A0A0B4J248 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-1A0A0B4J248 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
TRAV1-1A0A0B4J248 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
TRAV1-1A0A0B4J248 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
TRAV1-1A0A0B4J248 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRAV1-1A0A0B4J248 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRAV1-1A0A0B4J248 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-1A0A0B4J248 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-1A0A0B4J248 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-1A0A0B4J248 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-1A0A0B4J248 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-1A0A0B4J248 AC126177.7-201ENST00000547904 679 ntBASIC17.76■□□□□ 0.43
TRAV1-1A0A0B4J248 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-1A0A0B4J248 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-1A0A0B4J248 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-1A0A0B4J248 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-1A0A0B4J248 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TRAV1-1A0A0B4J248 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-1A0A0B4J248 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-1A0A0B4J248 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC17.75■□□□□ 0.43
TRAV1-1A0A0B4J248 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAV1-1A0A0B4J248 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-1A0A0B4J248 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
TRAV1-1A0A0B4J248 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAV1-1A0A0B4J248 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-1A0A0B4J248 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-1A0A0B4J248 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 AC087741.3-201ENST00000624270 1347 ntBASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 CD37-213ENST00000598095 1598 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV1-1A0A0B4J248 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 CHST11-202ENST00000546689 756 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV1-1A0A0B4J248 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-1A0A0B4J248 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-1A0A0B4J248 PALM-208ENST00000592155 2272 ntTSL 4 BASIC17.72■□□□□ 0.43
TRAV1-1A0A0B4J248 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV1-1A0A0B4J248 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV1-1A0A0B4J248 PFN2-211ENST00000489155 636 ntTSL 4 BASIC17.72■□□□□ 0.43
TRAV1-1A0A0B4J248 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
TRAV1-1A0A0B4J248 PKD1P6-201ENST00000343738 4769 ntBASIC17.72■□□□□ 0.43
TRAV1-1A0A0B4J248 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-1A0A0B4J248 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV1-1A0A0B4J248 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-1A0A0B4J248 AC026310.3-201ENST00000625186 2373 ntBASIC17.71■□□□□ 0.43
TRAV1-1A0A0B4J248 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-1A0A0B4J248 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TRAV1-1A0A0B4J248 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.71■□□□□ 0.43
TRAV1-1A0A0B4J248 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAV1-1A0A0B4J248 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV1-1A0A0B4J248 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 AP006261.1-201ENST00000584783 668 ntBASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-1A0A0B4J248 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 DUX4L29-201ENST00000425409 679 ntBASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 DUX4L13-201ENST00000554103 1267 ntBASIC17.69■□□□□ 0.42
TRAV1-1A0A0B4J248 DUX4L15-201ENST00000611059 1267 ntBASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms