Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 RN7SL618P-201ENST00000477850 296 ntBASIC13.78□□□□□ -0.2
AP4S1Q9Y587 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 TIMM17BP1-201ENST00000545713 516 ntBASIC13.78□□□□□ -0.2
AP4S1Q9Y587 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 AC103988.2-201ENST00000561804 725 ntBASIC13.78□□□□□ -0.2
AP4S1Q9Y587 AC010336.2-201ENST00000564226 506 ntBASIC13.78□□□□□ -0.2
AP4S1Q9Y587 AC051619.7-201ENST00000568314 623 ntBASIC13.78□□□□□ -0.2
AP4S1Q9Y587 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 MIR6080-201ENST00000617359 66 ntBASIC13.78□□□□□ -0.2
AP4S1Q9Y587 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 GPER1-207ENST00000619052 571 ntTSL 2 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 THSD7A-205ENST00000617773 10583 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 IL9RP2-201ENST00000423948 1312 ntBASIC13.78□□□□□ -0.2
AP4S1Q9Y587 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 AL355102.3-201ENST00000554299 1678 ntBASIC13.78□□□□□ -0.2
AP4S1Q9Y587 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC13.78□□□□□ -0.2
AP4S1Q9Y587 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
AP4S1Q9Y587 AC073869.1-201ENST00000415574 2762 ntBASIC13.77□□□□□ -0.2
AP4S1Q9Y587 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
AP4S1Q9Y587 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
AP4S1Q9Y587 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.2
AP4S1Q9Y587 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC13.77□□□□□ -0.2
AP4S1Q9Y587 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
AP4S1Q9Y587 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
AP4S1Q9Y587 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
AP4S1Q9Y587 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 AC139712.1-201ENST00000378256 1875 ntBASIC13.77□□□□□ -0.21
AP4S1Q9Y587 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 AC093520.2-201ENST00000561830 333 ntBASIC13.77□□□□□ -0.21
AP4S1Q9Y587 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
AP4S1Q9Y587 AL031719.1-201ENST00000623365 2587 ntBASIC13.77□□□□□ -0.21
AP4S1Q9Y587 AL928654.5-201ENST00000624831 2501 ntBASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms