Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC11.8□□□□□ -0.52
FOXA2Q9Y261 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 GZMB-202ENST00000382540 816 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 MPV17-205ENST00000402310 906 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 CD8B2-202ENST00000417670 633 ntBASIC11.79□□□□□ -0.52
FOXA2Q9Y261 POM121L8P-201ENST00000417732 1281 ntBASIC11.79□□□□□ -0.52
FOXA2Q9Y261 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 ARSEP1-201ENST00000420443 635 ntBASIC11.79□□□□□ -0.52
FOXA2Q9Y261 RPL7P3-201ENST00000441388 714 ntBASIC11.79□□□□□ -0.52
FOXA2Q9Y261 POM121L9P-203ENST00000441984 1285 ntBASIC11.79□□□□□ -0.52
FOXA2Q9Y261 PUDPP3-201ENST00000445368 636 ntBASIC11.79□□□□□ -0.52
FOXA2Q9Y261 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 AL590640.2-201ENST00000457038 527 ntBASIC11.79□□□□□ -0.52
FOXA2Q9Y261 FTLP10-202ENST00000505798 471 ntBASIC11.79□□□□□ -0.52
FOXA2Q9Y261 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 AHRR-211ENST00000515206 462 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 AC079316.1-201ENST00000548397 411 ntBASIC11.79□□□□□ -0.52
FOXA2Q9Y261 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 AL512343.1-201ENST00000605837 169 ntBASIC11.79□□□□□ -0.52
FOXA2Q9Y261 AC244669.2-201ENST00000612320 853 ntBASIC11.79□□□□□ -0.52
FOXA2Q9Y261 RHOXF1P1-202ENST00000635473 501 ntBASIC11.79□□□□□ -0.52
FOXA2Q9Y261 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC11.79□□□□□ -0.52
FOXA2Q9Y261 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 CETP-203ENST00000566128 1733 ntTSL 5 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AL354989.2-201ENST00000435838 1540 ntBASIC11.78□□□□□ -0.52
FOXA2Q9Y261 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 CNN2P8-201ENST00000421872 913 ntBASIC11.78□□□□□ -0.52
FOXA2Q9Y261 USB1-202ENST00000423271 1217 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 ACA64.2-201ENST00000459014 129 ntBASIC11.78□□□□□ -0.52
FOXA2Q9Y261 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AC104989.1-201ENST00000519711 778 ntBASIC11.78□□□□□ -0.52
FOXA2Q9Y261 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AP000812.2-201ENST00000538934 718 ntBASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms