Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 TBC1D3J-201ENST00000620719 1426 ntBASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 FGFR3P1-201ENST00000449999 601 ntBASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 POU5F1P2-201ENST00000521750 823 ntBASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 RN7SL555P-201ENST00000584742 339 ntBASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 AC103691.2-201ENST00000618824 433 ntBASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 AC133540.1-201ENST00000620845 1019 ntBASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 AC051619.9-201ENST00000623237 597 ntBASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 MST1P2-201ENST00000457982 2291 ntBASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 AC011498.7-201ENST00000624986 2027 ntBASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 AC020910.6-201ENST00000623084 1459 ntBASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
RPAP1Q9BWH6 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 IGLV3-15-201ENST00000518356 244 ntBASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 NAT9-211ENST00000580632 799 ntTSL 3 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 MIR7845-201ENST00000618396 99 ntBASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
RPAP1Q9BWH6 AC098935.1-201ENST00000446057 611 ntBASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms