Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 MEP1AP4-201ENST00000423244 1087 ntBASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 ALG3P1-201ENST00000508806 1114 ntBASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AC135782.3-201ENST00000562782 2105 ntBASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AC004449.1-201ENST00000564240 433 ntBASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AC124283.3-201ENST00000570869 594 ntBASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 BAP1-211ENST00000615113 489 ntBASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 RET-205ENST00000615310 4337 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AC107375.1-201ENST00000564464 2231 ntBASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 FTO-214ENST00000636218 2227 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 DLX4-206ENST00000611342 1662 ntBASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC28BQ9BUN5 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms