Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AGAP7P-201ENST00000582299 2062 ntBASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AGAP14-201ENST00000624701 2060 ntBASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 SERPINA13P-202ENST00000478994 924 ntBASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AC005740.2-201ENST00000511085 419 ntBASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AC100827.2-201ENST00000563214 1194 ntBASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AL358472.3-201ENST00000608147 415 ntBASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AL023803.2-201ENST00000620080 638 ntBASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 KRT8P29-201ENST00000420409 1371 ntBASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CLIP3Q96DZ5 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 AC006504.5-208ENST00000588784 2401 ntBASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 AC009093.2-202ENST00000620513 2079 ntBASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 AC131212.3-201ENST00000624087 4219 ntBASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 SLC25A24P2-201ENST00000415059 510 ntBASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 TPI1-206ENST00000488464 791 ntTSL 5 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 IGHV3OR16-16-201ENST00000563644 343 ntBASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 AC138649.2-201ENST00000615886 705 ntBASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 AC068587.10-201ENST00000641210 219 ntBASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms