Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.21■□□□□ 0.03
HDAC4P56524 RN7SL560P-201ENST00000577943 264 ntBASIC15.21■□□□□ 0.03
HDAC4P56524 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.21■□□□□ 0.03
HDAC4P56524 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
HDAC4P56524 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.21■□□□□ 0.03
HDAC4P56524 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.21■□□□□ 0.03
HDAC4P56524 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
HDAC4P56524 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
HDAC4P56524 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
HDAC4P56524 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.21■□□□□ 0.02
HDAC4P56524 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
HDAC4P56524 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
HDAC4P56524 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC15.21■□□□□ 0.02
HDAC4P56524 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
HDAC4P56524 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HDAC4P56524 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.21■□□□□ 0.02
HDAC4P56524 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.21■□□□□ 0.02
HDAC4P56524 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HDAC4P56524 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
HDAC4P56524 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
HDAC4P56524 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HDAC4P56524 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
HDAC4P56524 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.2■□□□□ 0.02
HDAC4P56524 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HDAC4P56524 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HDAC4P56524 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HDAC4P56524 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.2■□□□□ 0.02
HDAC4P56524 MTX1P1-201ENST00000440904 838 ntBASIC15.2■□□□□ 0.02
HDAC4P56524 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.2■□□□□ 0.02
HDAC4P56524 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HDAC4P56524 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
HDAC4P56524 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.2■□□□□ 0.02
HDAC4P56524 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.2■□□□□ 0.02
HDAC4P56524 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HDAC4P56524 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.2■□□□□ 0.02
HDAC4P56524 Six3os1_5.1-201ENST00000611000 271 ntBASIC15.2■□□□□ 0.02
HDAC4P56524 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
HDAC4P56524 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.2■□□□□ 0.02
HDAC4P56524 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
HDAC4P56524 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HDAC4P56524 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HDAC4P56524 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC4P56524 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
HDAC4P56524 ST20-AS1-201ENST00000560255 4223 ntBASIC15.19■□□□□ 0.02
HDAC4P56524 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
HDAC4P56524 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HDAC4P56524 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
HDAC4P56524 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
HDAC4P56524 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HDAC4P56524 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.19■□□□□ 0.02
HDAC4P56524 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.19■□□□□ 0.02
HDAC4P56524 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15.19■□□□□ 0.02
HDAC4P56524 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
HDAC4P56524 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC15.19■□□□□ 0.02
HDAC4P56524 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.19■□□□□ 0.02
HDAC4P56524 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.19■□□□□ 0.02
HDAC4P56524 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.19■□□□□ 0.02
HDAC4P56524 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 AC100827.2-201ENST00000563214 1194 ntBASIC15.19■□□□□ 0.02
HDAC4P56524 AC005586.2-201ENST00000563946 837 ntBASIC15.19■□□□□ 0.02
HDAC4P56524 AC005730.2-201ENST00000564549 1184 ntBASIC15.19■□□□□ 0.02
HDAC4P56524 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC15.19■□□□□ 0.02
HDAC4P56524 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.19■□□□□ 0.02
HDAC4P56524 KLK3-211ENST00000597483 810 ntTSL 2 BASIC15.19■□□□□ 0.02
HDAC4P56524 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms