Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 CD8B2-202ENST00000417670 633 ntBASIC14.07□□□□□ -0.16
FOXA1P55317 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 RN7SL752P-201ENST00000463779 287 ntBASIC14.07□□□□□ -0.16
FOXA1P55317 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXA1P55317 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXA1P55317 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.07□□□□□ -0.16
FOXA1P55317 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXA1P55317 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
FOXA1P55317 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXA1P55317 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 AC008735.3-201ENST00000596646 500 ntBASIC14.07□□□□□ -0.16
FOXA1P55317 AL355385.1-201ENST00000606123 409 ntBASIC14.07□□□□□ -0.16
FOXA1P55317 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXA1P55317 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
FOXA1P55317 AC027601.3-201ENST00000622907 509 ntBASIC14.07□□□□□ -0.16
FOXA1P55317 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
FOXA1P55317 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
FOXA1P55317 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
FOXA1P55317 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.06□□□□□ -0.16
FOXA1P55317 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 C2orf27AP3-201ENST00000434123 579 ntBASIC14.06□□□□□ -0.16
FOXA1P55317 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
FOXA1P55317 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.06□□□□□ -0.16
FOXA1P55317 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.06□□□□□ -0.16
FOXA1P55317 AC007389.4-201ENST00000454674 793 ntBASIC14.06□□□□□ -0.16
FOXA1P55317 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.06□□□□□ -0.16
FOXA1P55317 COX5BP1-201ENST00000507622 393 ntBASIC14.06□□□□□ -0.16
FOXA1P55317 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.06□□□□□ -0.16
FOXA1P55317 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.06□□□□□ -0.16
FOXA1P55317 RN7SL713P-201ENST00000582127 302 ntBASIC14.06□□□□□ -0.16
FOXA1P55317 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.06□□□□□ -0.16
FOXA1P55317 BAP1-211ENST00000615113 489 ntBASIC14.06□□□□□ -0.16
FOXA1P55317 AL354718.3-201ENST00000616414 581 ntBASIC14.06□□□□□ -0.16
FOXA1P55317 CR382287.1-201ENST00000623954 586 ntBASIC14.06□□□□□ -0.16
FOXA1P55317 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.06□□□□□ -0.16
FOXA1P55317 AC006453.4-201ENST00000636949 1252 ntBASIC14.06□□□□□ -0.16
FOXA1P55317 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
FOXA1P55317 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms