Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 FAM86LP-201ENST00000478302 853 ntBASIC13.92□□□□□ -0.18
MSX2P35548 AC022616.1-201ENST00000518688 554 ntBASIC13.92□□□□□ -0.18
MSX2P35548 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX2P35548 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC13.92□□□□□ -0.18
MSX2P35548 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 AC092865.5-201ENST00000545435 363 ntBASIC13.92□□□□□ -0.18
MSX2P35548 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX2P35548 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.92□□□□□ -0.18
MSX2P35548 AL049840.4-201ENST00000602422 811 ntBASIC13.92□□□□□ -0.18
MSX2P35548 AL662799.1-202ENST00000614205 422 ntBASIC13.92□□□□□ -0.18
MSX2P35548 5S_rRNA.22-201ENST00000614916 106 ntBASIC13.92□□□□□ -0.18
MSX2P35548 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.92□□□□□ -0.18
MSX2P35548 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX2P35548 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC13.92□□□□□ -0.18
MSX2P35548 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
MSX2P35548 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC13.92□□□□□ -0.18
MSX2P35548 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.92□□□□□ -0.18
MSX2P35548 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX2P35548 OS9-206ENST00000435406 2346 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX2P35548 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX2P35548 CICP1-201ENST00000416803 2410 ntBASIC13.92□□□□□ -0.18
MSX2P35548 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
MSX2P35548 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
MSX2P35548 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX2P35548 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.92□□□□□ -0.18
MSX2P35548 VENTXP1-201ENST00000569334 2716 ntBASIC13.92□□□□□ -0.18
MSX2P35548 AL022313.4-201ENST00000562756 2046 ntBASIC13.91□□□□□ -0.18
MSX2P35548 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
MSX2P35548 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 AC087499.5-201ENST00000452760 1342 ntBASIC13.91□□□□□ -0.18
MSX2P35548 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
MSX2P35548 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
MSX2P35548 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX2P35548 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX2P35548 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.91□□□□□ -0.18
MSX2P35548 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC13.91□□□□□ -0.18
MSX2P35548 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC13.91□□□□□ -0.18
MSX2P35548 RNU1-114P-201ENST00000365297 166 ntBASIC13.91□□□□□ -0.18
MSX2P35548 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
MSX2P35548 MPV17-208ENST00000405076 603 ntTSL 5 BASIC13.91□□□□□ -0.18
MSX2P35548 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.91□□□□□ -0.18
MSX2P35548 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC13.91□□□□□ -0.18
MSX2P35548 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
MSX2P35548 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX2P35548 SPDYE18-201ENST00000510091 1050 ntBASIC13.91□□□□□ -0.18
MSX2P35548 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX2P35548 AC131206.1-201ENST00000538078 1211 ntBASIC13.91□□□□□ -0.18
MSX2P35548 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC13.91□□□□□ -0.18
MSX2P35548 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX2P35548 MPI-209ENST00000564003 1195 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX2P35548 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.91□□□□□ -0.18
MSX2P35548 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.91□□□□□ -0.18
MSX2P35548 AC006538.3-201ENST00000612495 578 ntBASIC13.91□□□□□ -0.18
MSX2P35548 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.91□□□□□ -0.18
MSX2P35548 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC13.91□□□□□ -0.18
MSX2P35548 BX539320.1-201ENST00000623759 877 ntBASIC13.91□□□□□ -0.18
MSX2P35548 AC073592.8-201ENST00000624126 511 ntBASIC13.91□□□□□ -0.18
MSX2P35548 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
MSX2P35548 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
MSX2P35548 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
MSX2P35548 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC13.91□□□□□ -0.18
MSX2P35548 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC13.91□□□□□ -0.18
MSX2P35548 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MSX2P35548 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC13.9□□□□□ -0.18
MSX2P35548 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC13.9□□□□□ -0.18
MSX2P35548 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms