Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
PCNAP12004 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.26□□□□□ -0.13
PCNAP12004 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.26□□□□□ -0.13
PCNAP12004 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.25□□□□□ -0.13
PCNAP12004 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
PCNAP12004 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
PCNAP12004 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
PCNAP12004 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
PCNAP12004 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC14.25□□□□□ -0.13
PCNAP12004 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
PCNAP12004 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 KRT43P-201ENST00000434019 910 ntBASIC14.25□□□□□ -0.13
PCNAP12004 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
PCNAP12004 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.25□□□□□ -0.13
PCNAP12004 COX20P2-201ENST00000452636 358 ntBASIC14.25□□□□□ -0.13
PCNAP12004 AC007551.1-201ENST00000457394 519 ntBASIC14.25□□□□□ -0.13
PCNAP12004 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.25□□□□□ -0.13
PCNAP12004 AC106820.3-201ENST00000561653 397 ntBASIC14.25□□□□□ -0.13
PCNAP12004 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.25□□□□□ -0.13
PCNAP12004 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.25□□□□□ -0.13
PCNAP12004 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.25□□□□□ -0.13
PCNAP12004 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.25□□□□□ -0.13
PCNAP12004 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.25□□□□□ -0.13
PCNAP12004 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
PCNAP12004 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.25□□□□□ -0.13
PCNAP12004 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 AC009093.2-202ENST00000620513 2079 ntBASIC14.25□□□□□ -0.13
PCNAP12004 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.25□□□□□ -0.13
PCNAP12004 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.25□□□□□ -0.13
PCNAP12004 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
PCNAP12004 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.25□□□□□ -0.13
PCNAP12004 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PCNAP12004 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.24□□□□□ -0.13
PCNAP12004 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.24□□□□□ -0.13
PCNAP12004 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 MYADML-201ENST00000474610 2147 ntBASIC14.24□□□□□ -0.13
PCNAP12004 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
PCNAP12004 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC14.24□□□□□ -0.13
PCNAP12004 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
PCNAP12004 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.24□□□□□ -0.13
PCNAP12004 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
PCNAP12004 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.24□□□□□ -0.13
PCNAP12004 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.24□□□□□ -0.13
PCNAP12004 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
PCNAP12004 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.24□□□□□ -0.13
PCNAP12004 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
PCNAP12004 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.24□□□□□ -0.13
PCNAP12004 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
PCNAP12004 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.24□□□□□ -0.13
PCNAP12004 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 RN7SKP175-201ENST00000408472 289 ntBASIC14.24□□□□□ -0.13
PCNAP12004 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.24□□□□□ -0.13
PCNAP12004 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 AC078819.1-201ENST00000547454 765 ntBASIC14.24□□□□□ -0.13
PCNAP12004 AC012085.1-201ENST00000548270 765 ntBASIC14.24□□□□□ -0.13
PCNAP12004 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PCNAP12004 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.24□□□□□ -0.13
PCNAP12004 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.24□□□□□ -0.13
PCNAP12004 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.24□□□□□ -0.13
PCNAP12004 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.24□□□□□ -0.13
PCNAP12004 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.24□□□□□ -0.13
PCNAP12004 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms