Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
TNFP01375 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC14.13□□□□□ -0.15
TNFP01375 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.13□□□□□ -0.15
TNFP01375 AP000356.3-201ENST00000382243 753 ntBASIC14.13□□□□□ -0.15
TNFP01375 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.13□□□□□ -0.15
TNFP01375 RPS9P1-201ENST00000419943 583 ntBASIC14.13□□□□□ -0.15
TNFP01375 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC14.13□□□□□ -0.15
TNFP01375 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.13□□□□□ -0.15
TNFP01375 MPRIPP1-201ENST00000452433 1089 ntBASIC14.13□□□□□ -0.15
TNFP01375 TPT1P11-201ENST00000458482 498 ntBASIC14.13□□□□□ -0.15
TNFP01375 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC14.13□□□□□ -0.15
TNFP01375 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC14.13□□□□□ -0.15
TNFP01375 MIR4722-201ENST00000578292 60 ntBASIC14.13□□□□□ -0.15
TNFP01375 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.13□□□□□ -0.15
TNFP01375 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
TNFP01375 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
TNFP01375 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.13□□□□□ -0.15
TNFP01375 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
TNFP01375 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
TNFP01375 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
TNFP01375 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
TNFP01375 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
TNFP01375 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.13□□□□□ -0.15
TNFP01375 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.13□□□□□ -0.15
TNFP01375 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.13□□□□□ -0.15
TNFP01375 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TNFP01375 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.13□□□□□ -0.15
TNFP01375 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.12□□□□□ -0.15
TNFP01375 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
TNFP01375 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.12□□□□□ -0.15
TNFP01375 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.12□□□□□ -0.15
TNFP01375 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.12□□□□□ -0.15
TNFP01375 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.12□□□□□ -0.15
TNFP01375 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.12□□□□□ -0.15
TNFP01375 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.12□□□□□ -0.15
TNFP01375 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
TNFP01375 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 MIR557-201ENST00000385239 98 ntBASIC14.12□□□□□ -0.15
TNFP01375 FXNP2-201ENST00000411625 547 ntBASIC14.12□□□□□ -0.15
TNFP01375 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC14.12□□□□□ -0.15
TNFP01375 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC14.12□□□□□ -0.15
TNFP01375 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC14.12□□□□□ -0.15
TNFP01375 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
TNFP01375 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC14.12□□□□□ -0.15
TNFP01375 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
TNFP01375 SPCS2P2-201ENST00000603270 608 ntBASIC14.12□□□□□ -0.15
TNFP01375 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
TNFP01375 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC14.12□□□□□ -0.15
TNFP01375 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
TNFP01375 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.12□□□□□ -0.15
TNFP01375 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.12□□□□□ -0.15
TNFP01375 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
TNFP01375 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.12□□□□□ -0.15
TNFP01375 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
TNFP01375 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
TNFP01375 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.12□□□□□ -0.15
TNFP01375 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 MARK2P16-201ENST00000605714 1723 ntBASIC14.12□□□□□ -0.15
TNFP01375 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.12□□□□□ -0.15
TNFP01375 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
TNFP01375 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC14.12□□□□□ -0.15
TNFP01375 AC064801.2-201ENST00000625052 1303 ntBASIC14.12□□□□□ -0.15
TNFP01375 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TNFP01375 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
TNFP01375 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
TNFP01375 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.11□□□□□ -0.15
TNFP01375 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TNFP01375 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
TNFP01375 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms