Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SDCBPO00560 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SDCBPO00560 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
SDCBPO00560 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 KLF2P2-201ENST00000416807 1039 ntBASIC12.45□□□□□ -0.42
SDCBPO00560 GOLGA6L11P-201ENST00000417252 1298 ntBASIC12.45□□□□□ -0.42
SDCBPO00560 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC12.45□□□□□ -0.42
SDCBPO00560 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 AC002472.2-201ENST00000442739 958 ntBASIC12.45□□□□□ -0.42
SDCBPO00560 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 KRT18P25-201ENST00000508931 1278 ntBASIC12.45□□□□□ -0.42
SDCBPO00560 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC12.45□□□□□ -0.42
SDCBPO00560 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC12.45□□□□□ -0.42
SDCBPO00560 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC12.45□□□□□ -0.42
SDCBPO00560 AC140912.1-201ENST00000577171 1054 ntBASIC12.45□□□□□ -0.42
SDCBPO00560 RN7SL204P-201ENST00000582831 262 ntBASIC12.45□□□□□ -0.42
SDCBPO00560 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC12.45□□□□□ -0.42
SDCBPO00560 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC12.45□□□□□ -0.42
SDCBPO00560 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 AC015818.8-201ENST00000587907 1519 ntBASIC12.45□□□□□ -0.42
SDCBPO00560 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC12.45□□□□□ -0.42
SDCBPO00560 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SDCBPO00560 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 INVS-201ENST00000262456 2968 ntTSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
SDCBPO00560 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
SDCBPO00560 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC12.45□□□□□ -0.42
SDCBPO00560 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 AC073548.1-201ENST00000624088 1882 ntBASIC12.44□□□□□ -0.42
SDCBPO00560 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 DDC-213ENST00000617822 1809 ntTSL 3 BASIC12.44□□□□□ -0.42
SDCBPO00560 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 HADH-202ENST00000403312 1752 ntTSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 CALY-202ENST00000368555 783 ntTSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
SDCBPO00560 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 PIN1P1-201ENST00000412108 996 ntBASIC12.44□□□□□ -0.42
SDCBPO00560 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 AL162726.2-201ENST00000438986 1017 ntBASIC12.44□□□□□ -0.42
SDCBPO00560 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 OARD1-208ENST00000469104 704 ntTSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 ELK1P1-201ENST00000485699 580 ntBASIC12.44□□□□□ -0.42
SDCBPO00560 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC12.44□□□□□ -0.42
SDCBPO00560 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 API5-211ENST00000534695 560 ntTSL 5 BASIC12.44□□□□□ -0.42
SDCBPO00560 ENPP7P5-201ENST00000541031 1031 ntBASIC12.44□□□□□ -0.42
SDCBPO00560 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC12.44□□□□□ -0.42
SDCBPO00560 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
SDCBPO00560 MIR4745-201ENST00000577608 62 ntBASIC12.44□□□□□ -0.42
SDCBPO00560 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC12.44□□□□□ -0.42
SDCBPO00560 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC12.44□□□□□ -0.42
SDCBPO00560 AP005019.2-201ENST00000615104 511 ntBASIC12.44□□□□□ -0.42
SDCBPO00560 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC12.44□□□□□ -0.42
SDCBPO00560 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
SDCBPO00560 CU634019.7-201ENST00000624153 1185 ntBASIC12.44□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms