Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL136309.1-201ENST00000403917 691 ntBASIC13.78□□□□□ -0.2
SOX3P41225 RN7SKP175-201ENST00000408472 289 ntBASIC13.78□□□□□ -0.2
SOX3P41225 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.78□□□□□ -0.2
SOX3P41225 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.78□□□□□ -0.2
SOX3P41225 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 AC007969.1-201ENST00000433675 447 ntBASIC13.78□□□□□ -0.2
SOX3P41225 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 PFN1P12-201ENST00000455938 534 ntBASIC13.78□□□□□ -0.2
SOX3P41225 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 AC108725.1-201ENST00000495472 409 ntBASIC13.78□□□□□ -0.2
SOX3P41225 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC13.78□□□□□ -0.2
SOX3P41225 MIR4683-201ENST00000579659 81 ntBASIC13.78□□□□□ -0.2
SOX3P41225 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.78□□□□□ -0.2
SOX3P41225 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
SOX3P41225 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
SOX3P41225 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.78□□□□□ -0.2
SOX3P41225 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
SOX3P41225 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
SOX3P41225 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.77□□□□□ -0.2
SOX3P41225 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.77□□□□□ -0.2
SOX3P41225 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
SOX3P41225 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SOX3P41225 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
SOX3P41225 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
SOX3P41225 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 RN7SKP230-201ENST00000365642 335 ntBASIC13.77□□□□□ -0.21
SOX3P41225 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.77□□□□□ -0.21
SOX3P41225 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 AL138725.1-201ENST00000407347 1314 ntBASIC13.77□□□□□ -0.21
SOX3P41225 AC079178.1-201ENST00000420915 656 ntBASIC13.77□□□□□ -0.21
SOX3P41225 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 HIST2H2BB-201ENST00000449108 381 ntBASIC13.77□□□□□ -0.21
SOX3P41225 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.77□□□□□ -0.21
SOX3P41225 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.77□□□□□ -0.21
SOX3P41225 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.77□□□□□ -0.21
SOX3P41225 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.77□□□□□ -0.21
SOX3P41225 RPSAP36-202ENST00000494591 1261 ntBASIC13.77□□□□□ -0.21
SOX3P41225 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
SOX3P41225 COL6A4P2-202ENST00000504443 2753 ntBASIC13.77□□□□□ -0.21
SOX3P41225 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.77□□□□□ -0.21
SOX3P41225 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.77□□□□□ -0.21
SOX3P41225 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.77□□□□□ -0.21
SOX3P41225 PACS1-203ENST00000524815 628 ntTSL 4 BASIC13.77□□□□□ -0.21
SOX3P41225 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.77□□□□□ -0.21
SOX3P41225 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.77□□□□□ -0.21
SOX3P41225 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.77□□□□□ -0.21
SOX3P41225 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
SOX3P41225 AC009093.2-202ENST00000620513 2079 ntBASIC13.77□□□□□ -0.21
SOX3P41225 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.77□□□□□ -0.21
SOX3P41225 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.77□□□□□ -0.21
SOX3P41225 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
SOX3P41225 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.77□□□□□ -0.21
SOX3P41225 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
SOX3P41225 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX3P41225 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SOX3P41225 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.76□□□□□ -0.21
SOX3P41225 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms