Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
PDLIM3Q53GG5 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 AL662890.1-201ENST00000396818 632 ntBASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 USB1-202ENST00000423271 1217 ntTSL 2 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 AC104306.2-201ENST00000451877 341 ntBASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 AL512361.1-201ENST00000554200 418 ntBASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 OS9-207ENST00000439210 1946 ntTSL 2 BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PDLIM3Q53GG5 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 C1R-201ENST00000535233 2211 ntTSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 ARHGAP23P1-201ENST00000562773 1937 ntBASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 RPL7P3-201ENST00000441388 714 ntBASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC12.22□□□□□ -0.45
PDLIM3Q53GG5 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms